TMAP8 System Design Description

This template follows INL template TEM-140, "IT System Design Description."

note

This document serves as an addendum to Framework System Design Description and captures information for Software Design Description (SDD) specific to the TMAP8 application.

Introduction

Many of the phenomena related to tritium transport depend on the solutions of multiple physics models, which can be described by partial differential equations that provide spatially- and temporally-varying values of solution variables. These models for individual physics often depend on each other. TMAP8 relies on the MOOSE framework to solve these physics models, accounting for the couplings that may occur between them. This document describes the system design of TMAP8.

System Purpose

The Software Design Description provided here is description of each object in the system. The pluggable architecture of the underlying framework of TMAP8 makes MOOSE and MOOSE-based applications straightforward to develop as each piece of end-user (developer) code that goes into the system follows a well-defined interface for the underlying systems that those object plug into. These descriptions are provided through developer-supplied "markdown" files that are required for all new objects that are developed as part of TMAP8. More information about the design documentation for MOOSE-based applications like TMAP8 can be found in Documenting MOOSE.

System Scope

TMAP8 is an application for performing system-level, engineering scale (i.e., at the scale of centimeters and meters), and microstructure-scale (i.e., at the scale of microns) mass and thermal transport calculations related to tritium migration. These models often include highly coupled systems of equations related to heat conduction, scalar transport, thermal hydraulics, and mechanics, amongst others. Material models are also included to support these simulations, and they themselves are often dependent on simulation variables: temperature, irradiation flux, etc. While many models within TMAP8 are performed at the system-level or engineering scale, the MultiApp System can be leveraged to allow for multiscale coupling to the micro- and nano-scale species behavior. This allows for higher fidelity modeling.

Dependencies and Limitations

TMAP8 inherits the software dependencies of the MOOSE framework, with no additional dependencies.

Definitions and Acronyms

This section defines, or provides the definition of, all terms and acronyms required to properly understand this specification.

Definitions

Pull (Merge) Request: A proposed change to the software (e.g. usually a code change, but may also include documentation, requirements, design, and/or testing).
Baseline: A specification or product (e.g., project plan, maintenance and operations (M&O) plan, requirements, or design) that has been formally reviewed and agreed upon, that thereafter serves as the basis for use and further development, and that can be changed only by using an approved change control process (NQA-1, 2009).
Validation: Confirmation, through the provision of objective evidence (e.g., acceptance test), that the requirements for a specific intended use or application have been fulfilled (24765:2010(E), 2010).
Verification: (1) The process of: evaluating a system or component to determine whether the products of a given development phase satisfy the conditions imposed at the start of that phase. (2) Formal proof of program correctness (e.g., requirements, design, implementation reviews, system tests) (24765:2010(E), 2010).

Acronyms

Acronym	Description
API	Application Programming Interface
DOE	Department of Energy
FE	finite element
HIT	Hierarchical Input Text
HPC	High Performance Computing
I/O	Input/Output
INL	Idaho National Laboratory
MOOSE	Multiphysics Object Oriented Simulation Environment
MPI	Message Passing Interface
SDD	Software Design Description

Design Stakeholders and Concerns

Design Stakeholders

Stakeholders for TMAP8 include several of the funding sources including Department of Energy (DOE) and INL. However, since TMAP8 is an open-source project, several universities, companies, and foreign governments have an interest in the development and maintenance of the TMAP8 project.

Stakeholder Design Concerns

Concerns from many of the stakeholders are similar. These concerns include correctness, stability, and performance. The mitigation plan for each of these can be addressed. For correctness, TMAP8 development requires either regression or unit testing for all new code added to the repository. The project contains several comparisons against analytical solutions where possible and also other verification methods such as MMS. For stability, TMAP8 maintains multiple branches to incorporate several layers of testing both internally and for dependent applications. Finally, performance tests are also performed as part of the the normal testing suite to monitor code change impacts to performance.

System Design

TMAP8 relies on MOOSE to solve the coupled physics models underlying tritium transport, accounting for the couplings that may occur between them. The design of MOOSE is based on the concept of modular code objects that define all of the aspects of the physics model. TMAP8 follows this design, providing code objects that define specific aspects of the solutions for its physics that derive from the base classes defined by the MOOSE framework and the modules that it depends on.

TMAP8 provides specialized Kernel classes that compute the contributions from the terms in the partial differential equations for heat conduction, tritium diffusion, surface reactions, and other phenomena. It also provides specialized Material classes that define the constitutive behavior of materials of interest for diffusion, solubility, trapping, resolution, reactivity, permeation, and other physical properties. In addition, it provides miscellaneous BC and InterfaceKernel classes to facilitate various aspects of these simulations, such as plasma exposure, surface reactions, and transfer of species across enclosures, among others. Much of the functionality of TMAP8 is provided by the MOOSE modules that it builds on.

System Structure

TMAP8 relies on the MOOSE framework to provide the core functionality of solving multiphysics problems using the finite element method. It also relies on the MOOSE modules for much of its core functionality. A summary listing of the current modules required for complete TMAP8 operation are shown below:

The structure of TMAP8 is based on defining C++ classes that derive from classes in the MOOSE framework or modules that provide functionality that is specifically tailored to tritium migration problems. By using the interfaces defined in MOOSE base classes for these classes, TMAP8 is able to rely on MOOSE to execute these models at the appropriate times during the simulation and use their results in the desired ways.

Data Design and Control

At a high level, the system is designed to process Hierarchical Input Text (HIT) input files to construct several objects that will constitute an finite element (FE) simulation. Some of the objects in the simulation may in turn load other file-based resources to complete the simulation. Examples include meshes or data files. The system will then assemble systems of equations and solve them using the libraries of the Code Platform. The system can then output the solution in one or more supported output formats commonly used for visualization.

Human-Machine Interface Design

The TMAP8 application is a command-line driven program. All interaction with TMAP8 is ultimately done through the command line. This is typical for HPC applications that use the MPI interface for running on super computing clusters. Optional GUIs may be used to assist in creating input files and launching executables on the command line.

System Design Interface

All external system interaction is performed either through file Input/Output (I/O) or through local Application Programming Interface (API) calls. Neither TMAP8, nor the MOOSE framework, nor the MOOSE modules are designed to interact with any external system directly through remote procedure calls. Any code to code coupling performed using the framework are done directly through API calls either in a static binary or after loading shared libraries.

Security Structure

The TMAP8 application does not require any elevated privileges to operate and does not run any stateful services, daemons or other network programs. Distributed runs rely on the MPI library.

Requirements Cross-Reference

tmap8: InterfaceDiffusion
2.1.1The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature.
Specification(s): ZrCoHx_PCT_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.2The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature and generate an exodus file.
Specification(s): ZrCoHx_PCT_exodus
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.1.3The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=433.15 K.
Specification(s): ZrCoHx_PCT_T433_1E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.4The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=3e4 Pa and T=433.15 K.
Specification(s): ZrCoHx_PCT_T433_3E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.5The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=5e4 Pa and T=604.15 K.
Specification(s): ZrCoHx_PCT_T604_5E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.6The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=573.15 K.
Specification(s): ZrCoHx_PCT_T573_1E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.7The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e3 Pa and T=573.15 K.
Specification(s): ZrCoHx_PCT_T573_1E3P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.8The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=604.15 K.
Specification(s): ZrCoHx_PCT_T604_1E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.9The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=6e3 Pa and T=604.15 K.
Specification(s): ZrCoHx_PCT_T604_6E3P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.10The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e2 Pa and T=433.15 K.
Specification(s): ZrCoHx_PCT_T433_1E2P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.11The system shall be able to generate comparison plots between experimental PCT curves of ZrCoHx, the model used in TMAP8, and TMAP8 predictions.
Specification(s): ZrCoHx_PCT_comparison
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): RunCommand
2.1.12The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the ZrCoHxPCT model (pressure too low).
Specification(s): ZrCoHx_PCT_error_low_pressure
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.1.13The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the ZrCoHxPCT model (pressure too high).
Specification(s): ZrCoHx_PCT_error_high_pressure
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.50.1The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature.
Specification(s): YHx_PCT_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.2The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature and generate an exodus file.
Specification(s): YHx_PCT_exodus
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.50.3The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e3 Pa and T=1173.15 K.
Specification(s): YHx_PCT_T1173_P1e3_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.4The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=1173.15 K.
Specification(s): YHx_PCT_T1173_P1e4_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.5The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=5e4 Pa and T=1173.15 K.
Specification(s): YHx_PCT_T1173_P5e4_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.6The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=3e3 Pa and T=1273.15 K.
Specification(s): YHx_PCT_T1273_P3e3_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.7The system shall be able to generate comparison plots between experimental PCT curves, the model used in TMAP8, and TMAP8 predictions.
Specification(s): YHx_PCT_comparison
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): RunCommand
2.50.8The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the YHxPCT model (pressure too low).
Specification(s): YHx_PCT_error_low_pressure
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.50.9The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the YHxPCT model (pressure too high).
Specification(s): YHx_PCT_error_high_pressure
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException

tmap8: ADMatInterfaceReactionZrCoHxPCT
2.1.1The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature.
Specification(s): ZrCoHx_PCT_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.2The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature and generate an exodus file.
Specification(s): ZrCoHx_PCT_exodus
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.1.3The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=433.15 K.
Specification(s): ZrCoHx_PCT_T433_1E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.4The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=3e4 Pa and T=433.15 K.
Specification(s): ZrCoHx_PCT_T433_3E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.5The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=5e4 Pa and T=604.15 K.
Specification(s): ZrCoHx_PCT_T604_5E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.6The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=573.15 K.
Specification(s): ZrCoHx_PCT_T573_1E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.7The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e3 Pa and T=573.15 K.
Specification(s): ZrCoHx_PCT_T573_1E3P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.8The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=604.15 K.
Specification(s): ZrCoHx_PCT_T604_1E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.9The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=6e3 Pa and T=604.15 K.
Specification(s): ZrCoHx_PCT_T604_6E3P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.10The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e2 Pa and T=433.15 K.
Specification(s): ZrCoHx_PCT_T433_1E2P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.11The system shall be able to generate comparison plots between experimental PCT curves of ZrCoHx, the model used in TMAP8, and TMAP8 predictions.
Specification(s): ZrCoHx_PCT_comparison
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): RunCommand
2.1.12The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the ZrCoHxPCT model (pressure too low).
Specification(s): ZrCoHx_PCT_error_low_pressure
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.1.13The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the ZrCoHxPCT model (pressure too high).
Specification(s): ZrCoHx_PCT_error_high_pressure
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException

tmap8: MatDiffusion
2.1.1The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature.
Specification(s): ZrCoHx_PCT_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.2The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature and generate an exodus file.
Specification(s): ZrCoHx_PCT_exodus
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.1.3The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=433.15 K.
Specification(s): ZrCoHx_PCT_T433_1E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.4The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=3e4 Pa and T=433.15 K.
Specification(s): ZrCoHx_PCT_T433_3E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.5The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=5e4 Pa and T=604.15 K.
Specification(s): ZrCoHx_PCT_T604_5E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.6The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=573.15 K.
Specification(s): ZrCoHx_PCT_T573_1E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.7The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e3 Pa and T=573.15 K.
Specification(s): ZrCoHx_PCT_T573_1E3P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.8The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=604.15 K.
Specification(s): ZrCoHx_PCT_T604_1E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.9The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=6e3 Pa and T=604.15 K.
Specification(s): ZrCoHx_PCT_T604_6E3P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.10The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e2 Pa and T=433.15 K.
Specification(s): ZrCoHx_PCT_T433_1E2P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.11The system shall be able to generate comparison plots between experimental PCT curves of ZrCoHx, the model used in TMAP8, and TMAP8 predictions.
Specification(s): ZrCoHx_PCT_comparison
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): RunCommand
2.1.12The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the ZrCoHxPCT model (pressure too low).
Specification(s): ZrCoHx_PCT_error_low_pressure
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.1.13The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the ZrCoHxPCT model (pressure too high).
Specification(s): ZrCoHx_PCT_error_high_pressure
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.43.1The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1jb_csvdiff
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.2The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps and output the profiles of concentrations.
Specification(s): ver-1jb_csvdiff_profile
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.3The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps with equivalent initial mobile and trapped tritium concentration, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1jb_csvdiff_equivalent_concentrations
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.4The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps with equivalent initial mobile and trapped tritium concentration and output the profiles of concentrations.
Specification(s): ver-1jb_csvdiff_profile_equivalent_concentrations
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.5The system shall be able to generate comparison plots between the analytical solution and simulated solution when modeling decay of tritium and associated growth of He in a diffusion segment with distributed traps.
Specification(s): ver-1jb_comparison
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1jb
2.45.1The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law without any concentration jump at the interface.
Specification(s): ver-1kb_csv_without_concentration_jump
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kb
2.45.2The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law with a concentration jump at the interface.
Specification(s): ver-1kb_csv_concentration_jump
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kb
2.45.3The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law with a concentration jump at the interface to generate csv for use in comparisons with the analytic solution.
Specification(s): ver-1kb_exodus_concentration_jump
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1kb
2.45.4The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kb, modeling a diffusion across a membrane separating two enclosures in accordance with Henry’s law.
Specification(s): ver-1kb_comparison
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1kb
2.46.1The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface.
Specification(s): ver-1kc-1_csv
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kc-1
2.46.2The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with a fine mesh and tight tolerances for higher accuracy.
Specification(s): ver-1kc-1_csv_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kc-1
2.46.3The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with a fine mesh and tight tolerances for higher accuracy and generate an exodus file.
Specification(s): ver-1kc-1_exodus_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1kc-1
2.46.4The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kc-1, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law.
Specification(s): ver-1kc-1_comparison
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1kc-1
2.47.1The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface.
Specification(s): ver-1kc-2_csv
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kc-2
2.47.2The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with tight tolerances for higher accuracy.
Specification(s): ver-1kc-2_csv_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kc-2
2.47.3The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and generate an exodus file with tight tolerances for higher accuracy.
Specification(s): ver-1kc-2_exodus_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1kc-2
2.47.4The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kc-2, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law.
Specification(s): ver-1kc-2_comparison
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1kc-2
2.48.1The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term.
Specification(s): ver-1kd_csv
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kd
2.48.2The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term with tight tolerances for higher accuracy.
Specification(s): ver-1kd_csv_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kd
2.48.3The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term and generate an exodus file with tight tolerances for higher accuracy.
Specification(s): ver-1kd_exodus_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1kd
2.48.4The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kd, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law and a T2 volumetric source term.
Specification(s): ver-1kd_comparison
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1kd
2.50.1The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature.
Specification(s): YHx_PCT_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.2The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature and generate an exodus file.
Specification(s): YHx_PCT_exodus
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.50.3The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e3 Pa and T=1173.15 K.
Specification(s): YHx_PCT_T1173_P1e3_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.4The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=1173.15 K.
Specification(s): YHx_PCT_T1173_P1e4_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.5The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=5e4 Pa and T=1173.15 K.
Specification(s): YHx_PCT_T1173_P5e4_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.6The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=3e3 Pa and T=1273.15 K.
Specification(s): YHx_PCT_T1273_P3e3_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.7The system shall be able to generate comparison plots between experimental PCT curves, the model used in TMAP8, and TMAP8 predictions.
Specification(s): YHx_PCT_comparison
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): RunCommand
2.50.8The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the YHxPCT model (pressure too low).
Specification(s): YHx_PCT_error_low_pressure
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.50.9The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the YHxPCT model (pressure too high).
Specification(s): YHx_PCT_error_high_pressure
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException

tmap8: TimeDerivative
2.1.1The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature.
Specification(s): ZrCoHx_PCT_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.2The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature and generate an exodus file.
Specification(s): ZrCoHx_PCT_exodus
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.1.3The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=433.15 K.
Specification(s): ZrCoHx_PCT_T433_1E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.4The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=3e4 Pa and T=433.15 K.
Specification(s): ZrCoHx_PCT_T433_3E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.5The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=5e4 Pa and T=604.15 K.
Specification(s): ZrCoHx_PCT_T604_5E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.6The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=573.15 K.
Specification(s): ZrCoHx_PCT_T573_1E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.7The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e3 Pa and T=573.15 K.
Specification(s): ZrCoHx_PCT_T573_1E3P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.8The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=604.15 K.
Specification(s): ZrCoHx_PCT_T604_1E4P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.9The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=6e3 Pa and T=604.15 K.
Specification(s): ZrCoHx_PCT_T604_6E3P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.10The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e2 Pa and T=433.15 K.
Specification(s): ZrCoHx_PCT_T433_1E2P_csv
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.1.11The system shall be able to generate comparison plots between experimental PCT curves of ZrCoHx, the model used in TMAP8, and TMAP8 predictions.
Specification(s): ZrCoHx_PCT_comparison
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONAL
Type(s): RunCommand
2.1.12The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the ZrCoHxPCT model (pressure too low).
Specification(s): ZrCoHx_PCT_error_low_pressure
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.1.13The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the ZrCoHxPCT model (pressure too high).
Specification(s): ZrCoHx_PCT_error_high_pressure
Design: InterfaceDiffusion ADMatInterfaceReactionZrCoHxPCT MatDiffusion TimeDerivative
Issue(s): #366
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.22.1The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source.
Specification(s): ver-1b
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1b
2.22.2The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1b_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1b
2.22.3The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source using a Physics and Components syntax.
Specification(s): ver-1b-components
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1b
2.22.4The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source using a Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1b-components_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1b
2.22.5The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source with the fine mesh and time step required to match the analytical solution.
Specification(s): ver-1b_heavy
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1b
2.22.6The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1b_heavy_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1b
2.22.7The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration.
Specification(s): ver-1b_heavy_lineplot
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1b
2.22.8The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1b, modeling transient diffusion through a slab with a constant concentration boundary condition as the species source.
Specification(s): ver-1b_comparison
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1b
2.23.1The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion with boundary conditions consistent with TMAP4.
Specification(s): ver-1c_TMAP4
Design: Diffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1c
2.23.2The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion with boundary conditions consistent with TMAP7
Specification(s): ver-1c_TMAP7
Design: Diffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1c
2.23.3The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion, using a Physics and Components syntax.
Specification(s): ver-1c-components
Design: Diffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1c
2.23.4The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion to generate CSV data for use in comparisons with the analytic solution over time for the TMAP4 verification case.
Specification(s): ver-1c_TMAP4_csvdiff
Design: Diffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1c
2.23.5The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion to generate CSV data for use in comparisons with the analytic solution over time for the TMAP7 verification case.
Specification(s): ver-1c_TMAP7_csvdiff
Design: Diffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1c
2.23.6The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion using a Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution over time for the TMAP7 verification case.
Specification(s): ver-1c-components_csvdiff
Design: Diffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1c
2.23.7The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1c, modeling species permeation into an unloaded portion of a slab from a pre-loaded portion for both the TMAP4 and TMAP7 verification cases.
Specification(s): ver-1c_comparison
Design: Diffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1c
2.27.1The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source.
Specification(s): ver-1e
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1e
2.27.2The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1e_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.3The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, using the shorthand Physics and Components syntax.
Specification(s): ver-1e-component
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1e
2.27.4The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, using the shorthand Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1e-component_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.5The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution for the TMAP4 verification case.
Specification(s): ver-1e_TMAP4_heavy
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1e
2.27.6The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution for the TMAP7 verification case.
Specification(s): ver-1e_TMAP7_heavy
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1e
2.27.7The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time for the TMAP4 verification case.
Specification(s): ver-1e_TMAP4_heavy_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.8The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time for the TMAP7 verification case.
Specification(s): ver-1e_TMAP7_heavy_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.9The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration for the TMAP4 verification case.
Specification(s): ver-1e_TMAP4_heavy_lineplot
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.10The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration for the TMAP7 verification case.
Specification(s): ver-1e_TMAP7_heavy_lineplot
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.11The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1e, modeling transient diffusion through a composite slab with a constant concentration boundary condition as the species source for both the TMAP4 and TMAP7 verification cases.
Specification(s): ver-1e_comparison
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1e
2.45.1The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law without any concentration jump at the interface.
Specification(s): ver-1kb_csv_without_concentration_jump
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kb
2.45.2The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law with a concentration jump at the interface.
Specification(s): ver-1kb_csv_concentration_jump
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kb
2.45.3The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law with a concentration jump at the interface to generate csv for use in comparisons with the analytic solution.
Specification(s): ver-1kb_exodus_concentration_jump
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1kb
2.45.4The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kb, modeling a diffusion across a membrane separating two enclosures in accordance with Henry’s law.
Specification(s): ver-1kb_comparison
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1kb
2.46.1The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface.
Specification(s): ver-1kc-1_csv
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kc-1
2.46.2The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with a fine mesh and tight tolerances for higher accuracy.
Specification(s): ver-1kc-1_csv_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kc-1
2.46.3The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with a fine mesh and tight tolerances for higher accuracy and generate an exodus file.
Specification(s): ver-1kc-1_exodus_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1kc-1
2.46.4The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kc-1, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law.
Specification(s): ver-1kc-1_comparison
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1kc-1
2.47.1The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface.
Specification(s): ver-1kc-2_csv
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kc-2
2.47.2The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with tight tolerances for higher accuracy.
Specification(s): ver-1kc-2_csv_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kc-2
2.47.3The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and generate an exodus file with tight tolerances for higher accuracy.
Specification(s): ver-1kc-2_exodus_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1kc-2
2.47.4The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kc-2, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law.
Specification(s): ver-1kc-2_comparison
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1kc-2
2.48.1The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term.
Specification(s): ver-1kd_csv
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kd
2.48.2The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term with tight tolerances for higher accuracy.
Specification(s): ver-1kd_csv_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kd
2.48.3The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term and generate an exodus file with tight tolerances for higher accuracy.
Specification(s): ver-1kd_exodus_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1kd
2.48.4The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kd, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law and a T2 volumetric source term.
Specification(s): ver-1kd_comparison
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1kd
2.50.1The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature.
Specification(s): YHx_PCT_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.2The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature and generate an exodus file.
Specification(s): YHx_PCT_exodus
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.50.3The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e3 Pa and T=1173.15 K.
Specification(s): YHx_PCT_T1173_P1e3_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.4The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=1173.15 K.
Specification(s): YHx_PCT_T1173_P1e4_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.5The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=5e4 Pa and T=1173.15 K.
Specification(s): YHx_PCT_T1173_P5e4_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.6The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=3e3 Pa and T=1273.15 K.
Specification(s): YHx_PCT_T1273_P3e3_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.7The system shall be able to generate comparison plots between experimental PCT curves, the model used in TMAP8, and TMAP8 predictions.
Specification(s): YHx_PCT_comparison
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): RunCommand
2.50.8The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the YHxPCT model (pressure too low).
Specification(s): YHx_PCT_error_low_pressure
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.50.9The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the YHxPCT model (pressure too high).
Specification(s): YHx_PCT_error_high_pressure
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException

tmap8: Enclosure0D
2.2.1
The system shall return an error if
1. the number of species does not match the number of species initial pressures,
2. the number of species does not match the number of scaling factors for the species equations,
3. the number of species does not match the number of equilibrium constants.
Specification(s): enclosure_0D_wrong_sizes/species_initial_p, enclosure_0D_wrong_sizes/species_scaling_factors, enclosure_0D_wrong_sizes/species_equilibrium
Design: Enclosure0D
Issue(s): #8
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.2.2
The system shall return an error if
1. no Physics have been defined on an enclosure,
2. more than one Physics have been defined on an enclosure, which is currently not supported,
3. an unsupported Physics has been defined on an enclosure,
Specification(s): enclosure_0D_physics_support/no_physics, enclosure_0D_physics_support/two_physics, enclosure_0D_physics_support/unsupported_physics
Design: Enclosure0D
Issue(s): #8
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.2.3
The system shall return an error if the parameters of the enclosure component and on the sorption exchange Physics are
1. both specified and not matching,
2. both not specified but necessary to define the equations.
Specification(s): enclosure_0D_parameter_consistency/not_matching, enclosure_0D_parameter_consistency/missing_in_both
Design: Enclosure0D Species Solubility in 0D Structures / SorptionExchangePhysics
Issue(s): #8
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.2.7The system shall be able to model two enclosures connected to the same structure.
Specification(s): two_enclosures
Design: Enclosure0D Species Solubility in 0D Structures / SorptionExchangePhysics
Issue(s): #9
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.2.8The system shall be able to model two enclosures connected to the same structure but holding different species.
Specification(s): two_enclosures_two_phys_diff_species
Design: Enclosure0D Species Solubility in 0D Structures / SorptionExchangePhysics
Issue(s): #9
Collection(s): FUNCTIONAL
Type(s): CSVDiff

tmap8: Species Solubility in 0D Structures / SorptionExchangePhysics
2.2.3
The system shall return an error if the parameters of the enclosure component and on the sorption exchange Physics are
1. both specified and not matching,
2. both not specified but necessary to define the equations.
Specification(s): enclosure_0D_parameter_consistency/not_matching, enclosure_0D_parameter_consistency/missing_in_both
Design: Enclosure0D Species Solubility in 0D Structures / SorptionExchangePhysics
Issue(s): #8
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.2.7The system shall be able to model two enclosures connected to the same structure.
Specification(s): two_enclosures
Design: Enclosure0D Species Solubility in 0D Structures / SorptionExchangePhysics
Issue(s): #9
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.2.8The system shall be able to model two enclosures connected to the same structure but holding different species.
Specification(s): two_enclosures_two_phys_diff_species
Design: Enclosure0D Species Solubility in 0D Structures / SorptionExchangePhysics
Issue(s): #9
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.10.1
The system shall return an error if
1. the number of species does not match the number of species initial pressures,
2. the number of species does not match the number of sorption equilibrium constants.
Specification(s): sorption_wrong_sizes/species_initial_p, sorption_wrong_sizes/species_equilibrium
Design: Species Solubility in 0D Structures / SorptionExchangePhysics
Issue(s): #8
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.10.2
The system shall return an error if
1. the temperature specified is negative,
2. the temperature is specified as a variable which is not currently specified,
3. the species equation scaling factor is negative or null,
4. the species initial pressure is negative,
5. the sorption equilibrium constant is negative or null,
Specification(s): sorption_bad_data/temperature, sorption_bad_data/temperature_var, sorption_bad_data/scaling_factor, sorption_bad_data/initial_pressure, sorption_bad_data/eq_constant
Design: Species Solubility in 0D Structures / SorptionExchangePhysics
Issue(s): #8
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.10.6The system shall be able to accept parameters for species sorption exchange on a component with the sorption exchange physics parameters defined for a single species.
Specification(s): sorption
Design: Species Solubility in 0D Structures / SorptionExchangePhysics
Issue(s): #9
Collection(s): FUNCTIONAL
Type(s): CSVDiff

tmap8: Structure1D
2.2.4
The system shall return an error if
1. the number of species does not match the number of species initial pressures,
Specification(s): structure_1D_wrong_sizes/species_initial_condition
Design: Structure1D
Issue(s): #8
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.2.5
The system shall return an error if the parameters of the structure component and on the species trapping Physics active on it are
1. both specified and not matching for the species,
2. both specified and not matching,
3. both specified and not matching as a material property,
4. both not specified but necessary to define the equations.
Specification(s): structure_1D_parameter_consistency/not_matching_species, structure_1D_parameter_consistency/not_matching_params, structure_1D_parameter_consistency/not_matching_property, structure_1D_parameter_consistency/missing_in_both
Design: Structure1D Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics
Issue(s): #8
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.2.6
The system shall return an error if the material properties specified on the component and on the species trapping Physics active on it are
1. both specified and not matching,
2. both not specified but necessary to define the equations.
Specification(s): structure_1D_matprop_consistency/not_matching_material_prop, structure_1D_matprop_consistency/missing_material_prop
Design: Structure1D Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics
Issue(s): #8
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.2.9The system shall be able to model two structures with the same species being trapped.
Specification(s): two_structures
Design: Structure1D Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics
Issue(s): #9
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.2.10The system shall be able to model two structures with the same species being trapped but using different variables for each structure.
Specification(s): two_structues_same_phys_diff_species_var
Design: Structure1D Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics
Issue(s): #9
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.2.11The system shall be able to model two structures with different species being trapped.
Specification(s): two_structures_diff_species
Design: Structure1D Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics
Issue(s): #9
Collection(s): FUNCTIONAL
Type(s): CSVDiff

tmap8: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics
2.2.5
The system shall return an error if the parameters of the structure component and on the species trapping Physics active on it are
1. both specified and not matching for the species,
2. both specified and not matching,
3. both specified and not matching as a material property,
4. both not specified but necessary to define the equations.
Specification(s): structure_1D_parameter_consistency/not_matching_species, structure_1D_parameter_consistency/not_matching_params, structure_1D_parameter_consistency/not_matching_property, structure_1D_parameter_consistency/missing_in_both
Design: Structure1D Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics
Issue(s): #8
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.2.6
The system shall return an error if the material properties specified on the component and on the species trapping Physics active on it are
1. both specified and not matching,
2. both not specified but necessary to define the equations.
Specification(s): structure_1D_matprop_consistency/not_matching_material_prop, structure_1D_matprop_consistency/missing_material_prop
Design: Structure1D Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics
Issue(s): #8
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.2.9The system shall be able to model two structures with the same species being trapped.
Specification(s): two_structures
Design: Structure1D Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics
Issue(s): #9
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.2.10The system shall be able to model two structures with the same species being trapped but using different variables for each structure.
Specification(s): two_structues_same_phys_diff_species_var
Design: Structure1D Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics
Issue(s): #9
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.2.11The system shall be able to model two structures with different species being trapped.
Specification(s): two_structures_diff_species
Design: Structure1D Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics
Issue(s): #9
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.10.3
The system shall return an error if
1. a species is repeated twice in the list of species,
2. the number of species does not match the number of species initial concentrations,
3. the number of species does not match the number of species balance equation scaling factors.
4. the number of trapped species does not match the number of mobile species,
5. the number of species does not match the number of trapping coefficients,
6. the number of species does not match the number of trapping Ct0 coefficients,
7. the number of species does not match the number of release coefficients,
8. the number of species does not match the number of detrapping energies.
Specification(s): trapping_wrong_sizes/repeated_species, trapping_wrong_sizes/species_initial_concentration, trapping_wrong_sizes/scaling_factors, trapping_wrong_sizes/mobile, trapping_wrong_sizes/alpha_t, trapping_wrong_sizes/Ct0, trapping_wrong_sizes/alpha_r, trapping_wrong_sizes/detrapping
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics
Issue(s): #8
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.10.4
The system shall return an error if
1. the temperature is specified as a function when only constants and variables are supported at this time.
2. no components are specified yet the Physics is set to create variables for each component,
Specification(s): trapping_bad_data/temperature_fun, trapping_bad_data/no_component_yet_asking_for_vars_per_comp
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics
Issue(s): #8
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.10.5
The system shall return an error if the species trapping Physics is not used on a component and
1. the species is not specified,
2. the trapping coefficient is not specified,
3. the trapping energy is not specified,
4. the number density of the traps is not specified,
5. the trapping Ct0 coefficient is not specified,
6. the number of traps filled per free particle trapped is not specified,
7. the release coefficient is not specified,
8. the detrapping energy is not specified.
Specification(s): trapping_missing_data/species, trapping_missing_data/alpha_t, trapping_missing_data/trapping_energy, trapping_missing_data/N, trapping_missing_data/Ct0, trapping_missing_data/trap_per_free, trapping_missing_data/alpha_r, trapping_missing_data/detrapping_energy
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics
Issue(s): #8
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.10.7The system shall be able to accept parameters for species trapping on a component with the trapping physics parameters defined for a single species.
Specification(s): trapping
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics
Issue(s): #9
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.10.8The system shall couple dimensionless trapped species on a component through shared trap occupancy using physics-syntax generated dimensionless trapping kernels.
Specification(s): trapping_dimensionless_other_trap
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics
Issue(s): #9
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.20.1The system shall be able to model deuterium transport in self-irradiated tungsten with a 1 nm natural-oxide oxygen-field representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the implicit Euler time integration scheme.
Specification(s): val-2k_natural_oxide_implicit_euler_csvdiff_light
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics MatNeumannBC
Issue(s): #399
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2k
2.20.2The system shall be able to produce the full field solution of a simulation of deuterium transport in self-irradiated tungsten with a 1 nm natural-oxide oxygen-field representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the implicit Euler time integration scheme.
Specification(s): val-2k_natural_oxide_implicit_euler_exodiff_light
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics MatNeumannBC
Issue(s): #399
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2k
2.20.3The system shall be able to model deuterium transport in self-irradiated tungsten with a 1 nm natural-oxide oxygen-field representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the backwards differencing formula of second order (BDF-2) time integration scheme.
Specification(s): val-2k_natural_oxide_bdf2_csvdiff
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics MatNeumannBC
Issue(s): #399
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2k
2.20.4The system shall be able to model deuterium transport in self-irradiated tungsten with a 5 nm oxygen-field oxide representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the backwards differencing formula of second order (BDF-2) time integration scheme.
Specification(s): val-2k_5nm_oxide_bdf2_csvdiff
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics MatNeumannBC
Issue(s): #399
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2k
2.20.5The system shall be able to model deuterium transport in self-irradiated tungsten with a 10 nm oxygen-field oxide representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the backwards differencing formula of second order (BDF-2) time integration scheme.
Specification(s): val-2k_10nm_oxide_bdf2_csvdiff
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics MatNeumannBC
Issue(s): #399
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2k
2.20.6The system shall be able to model deuterium transport in self-irradiated tungsten with a 15 nm oxygen-field oxide representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the backwards differencing formula of second order (BDF-2) time integration scheme.
Specification(s): val-2k_15nm_oxide_bdf2_csvdiff
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics MatNeumannBC
Issue(s): #399
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2k
2.20.7The system shall be able to output the initial deuterium and oxygen concentration profiles for the 15 nm oxygen-field oxide companion case in val-2k, including the mobile and trapped deuterium populations used to initialize the plotted sectioned profile.
Specification(s): val-2k_15nm_oxide_initial_profile_csvdiff
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics MatNeumannBC
Issue(s): #399
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2k
2.20.8The system shall be able to generate comparison plots for the val-2k validation, comparing the natural-oxide, 5 nm, 10 nm, and 15 nm oxygen-field oxide D2 and D2O release cases against the corresponding experimental data when the matching simulation outputs are available.
Specification(s): val-2k_comparison
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics MatNeumannBC
Issue(s): #399
Collection(s): FUNCTIONAL
Type(s): RunCommand
Validation: val-2k

tmap8: Contributing to TMAP8
2.3.1The system shall support HIT formatting on staged MOOSE input files via enforcement of a pre-commit hook, accepting well-formatted files and rejecting poorly-formatted ones.
Specification(s): hit_format_hook
Design: Contributing to TMAP8
Issue(s): #396
Collection(s): FUNCTIONAL
Type(s): RunCommand

tmap8: EquilibriumBC
2.4.1The system shall compute the equilibrium flux condition between an enclosure and a structure when a field variable is used for the enclosure variable.
Specification(s): equilibriumBC_field_variable
Design: EquilibriumBC
Issue(s): #134
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.4.2
The system shall error if
1. the user does not specify a function or a variable for the equilibrium flux boundary condition,
2. the user does not specify the block to use for the nodal evaluation of equilibrium constant.
Specification(s): errors/missing_temp, errors/missing_block
Design: EquilibriumBC
Issue(s): #134
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.13.1The system shall be able to model diffusion of deuterium in a beryllium sample and generate CSV data output for comparison to experimental results.
Specification(s): val-2b_heavy_csv
Design: EquilibriumBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2b
2.13.2The system shall be able to model diffusion of deuterium in a beryllium sample and generate field and material property data output in the Exodus format for comparison to experimental results.
Specification(s): val-2b_heavy_exodus
Design: EquilibriumBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2b
2.13.3The system shall be able to model diffusion of deuterium in beryllium sample with a short runtime suitable for regular regression testing.
Specification(s): val-2b_exodus
Design: EquilibriumBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2b
2.13.4The system shall be able to model diffusion of deuterium in beryllium sample with a short runtime suitable for regular regression testing and generate CSV data output for comparison to experimental results.
Specification(s): val-2b_exodus_csv
Design: EquilibriumBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2b
2.13.5The system shall be able to generate comparison plots between simulated solutions and experimental data of validation case val-2b, modeling diffusion and release of deuterium in a beryllium sample.
Specification(s): val-2b_comparison
Design: EquilibriumBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Validation: val-2b
2.16.1The system shall be able to model permeation of Deuterium from a 0.05 mm thick membrane at 825 K to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2ea_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.2The system shall be able to model permeation of Deuterium from a 0.05 mm thick membrane at 825 K.
Specification(s): val-2ea
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.3The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 825 K to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2eb_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.4The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 825 K.
Specification(s): val-2eb
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.5The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 865 K to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2ec_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.6The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 865 K and generate an exodus file.
Specification(s): val-2ec
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.7The system shall be able to model permeation of mixture gas from a 0.025 mm thin membrane at 870 K using lawdep boundary conditions to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2ed_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.8The system shall be able to model permeation of mixture gas with chemical reaction from a 0.025 mm thin membrane at 870 K using lawdep boundary conditions and generate an exodus file.
Specification(s): val-2ed
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.9The system shall be able to model permeation of mixture gas from a 0.025 mm thin membrane at 870 K using ratedep boundary conditions to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2ee_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.10The system shall be able to model permeation of mixture gas with chemical reaction from a 0.025 mm thin membrane at 870 K using ratedep boundary conditions and generate an exodus file.
Specification(s): val-2ee
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.11The system shall be able to generate comparison plots between the analytical solution and experimental data of validation case 2e, modeling the permeation of Deuterium from a membrane.
Specification(s): ver-2e_comparison
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: val-2e
2.21.1The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure.
Specification(s): ver-1a
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1a
2.21.2The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1a_csvdiff
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1a
2.21.3The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure using component syntax to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1a-components
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1a
2.21.4The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure, with the fine mesh and timestep required to match the analytical solution.
Specification(s): ver-1a_heavy
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1a
2.21.5The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1a_heavy_csvdiff
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1a
2.21.6The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1a, modeling species diffusion through a structure, originating from a depleting source enclosure.
Specification(s): ver-1a_comparison
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1a

tmap8: Divertor Monoblock During Pulsed Operation
2.5.1
The system shall maintain a working input file to model heat and tritium transport in a divertor monoblock during
1. pulsed operation (input check only).
2. pulsed operation.
3. pulsed operation with shorthand physics syntax
4. pulsed operation with a single tritium variable and physics syntax
Specification(s): initial/Shimada2024_input_check, initial/Shimada2024_run, initial/Shimada2024_run-physics, initial/Shimada2024_run-physics_single-variable
Design: Divertor Monoblock During Pulsed Operation
Issue(s): #144 #359 #333
Collection(s): FUNCTIONAL
Type(s): ExodiffRunAppCSVDiff

tmap8: Divertor Monoblock Sensitivities
2.5.2
The system shall model heat and tritium transporter for the sensitvity study of a divertor monoblock during
1. steady operation
2. a shutdown transient after steady operation
3. an ELM transient after steady operation
Specification(s): stochastics/steady_run, stochastics/shutdown_run, stochastics/elm_run
Design: Divertor Monoblock Sensitivities
Issue(s): #281
Collection(s): FUNCTIONAL
Type(s): JSONDiff
2.5.3The system shall be able to generate documentation plots from intensive stochastic runs
Specification(s): python_comparison
Design: Divertor Monoblock Sensitivities
Issue(s): #144 #359 #333
Collection(s): FUNCTIONAL
Type(s): RunCommand

tmap8: ParsedODEKernel
2.6.1The system shall reproduce a consistent solution to an ODE system of equations modeling the tritium fuel cycle.
Specification(s): Abdou2021
Design: ParsedODEKernel ODETimeDerivative
Issue(s): #82
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.6.9The system shall be able to generate comparison plots between the simulated solution from TMAP8 and Abdou et al. (2020), modeling tritium fuel cycle.
Specification(s): fuel_cycle_Abdou_comparison
Design: ParsedODEKernel ODETimeDerivative
Issue(s): #82
Collection(s): FUNCTIONAL
Type(s): RunCommand
2.6.10The system shall be able to open a graphical interface for the tritium fuel cycle example for user training.
Specification(s): gui
Design: ParsedODEKernel ODETimeDerivative
Issue(s): #82
Collection(s): FUNCTIONAL
Type(s): RunCommand
2.7.1The system shall be able to model the tritium fuel cycle from Meschini et al. (2023).
Specification(s): fuel_cycle_benchmarking_csvdiff
Design: ParsedODEKernel ODETimeDerivative
Issue(s): #245
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.7.2The system shall be able to the model tritium fuel cycle from Meschini et al. (2023) with fine time step.
Specification(s): fuel_cycle_benchmarking_heavy_csvdiff
Design: ParsedODEKernel ODETimeDerivative
Issue(s): #245
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.7.3The system shall be able to generate comparison plots between the simulated solution from TMAP8 and Meschini et al. (2023), modeling tritium fuel cycle.
Specification(s): fuel_cycle_benchmarking_comparison
Design: ParsedODEKernel ODETimeDerivative
Issue(s): #245
Collection(s): FUNCTIONAL
Type(s): RunCommand
2.44.1The system shall be able to model a tritium volumetric source in one enclosure and to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1ka_csv
Design: ODETimeDerivative ParsedODEKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1ka
2.44.2The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1ka, modeling a tritium volumetric source in one enclosure.
Specification(s): ver-1ka_comparison
Design: ODETimeDerivative ParsedODEKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1ka

tmap8: ODETimeDerivative
2.6.1The system shall reproduce a consistent solution to an ODE system of equations modeling the tritium fuel cycle.
Specification(s): Abdou2021
Design: ParsedODEKernel ODETimeDerivative
Issue(s): #82
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.6.9The system shall be able to generate comparison plots between the simulated solution from TMAP8 and Abdou et al. (2020), modeling tritium fuel cycle.
Specification(s): fuel_cycle_Abdou_comparison
Design: ParsedODEKernel ODETimeDerivative
Issue(s): #82
Collection(s): FUNCTIONAL
Type(s): RunCommand
2.6.10The system shall be able to open a graphical interface for the tritium fuel cycle example for user training.
Specification(s): gui
Design: ParsedODEKernel ODETimeDerivative
Issue(s): #82
Collection(s): FUNCTIONAL
Type(s): RunCommand
2.7.1The system shall be able to model the tritium fuel cycle from Meschini et al. (2023).
Specification(s): fuel_cycle_benchmarking_csvdiff
Design: ParsedODEKernel ODETimeDerivative
Issue(s): #245
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.7.2The system shall be able to the model tritium fuel cycle from Meschini et al. (2023) with fine time step.
Specification(s): fuel_cycle_benchmarking_heavy_csvdiff
Design: ParsedODEKernel ODETimeDerivative
Issue(s): #245
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.7.3The system shall be able to generate comparison plots between the simulated solution from TMAP8 and Meschini et al. (2023), modeling tritium fuel cycle.
Specification(s): fuel_cycle_benchmarking_comparison
Design: ParsedODEKernel ODETimeDerivative
Issue(s): #245
Collection(s): FUNCTIONAL
Type(s): RunCommand
2.44.1The system shall be able to model a tritium volumetric source in one enclosure and to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1ka_csv
Design: ODETimeDerivative ParsedODEKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1ka
2.44.2The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1ka, modeling a tritium volumetric source in one enclosure.
Specification(s): ver-1ka_comparison
Design: ODETimeDerivative ParsedODEKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1ka

tmap8: FuelCycleSystemScalarKernel
2.6.2The system shall reproduce a consistent solution to an ODE system of equations modeling the tritium fuel cycle with a built-in kernel.
Specification(s): fuel_cycle_kernel
Design: FuelCycleSystemScalarKernel
Issue(s): #329
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.6.3The fuel cycle system kernel shall have a steady-state flag that will allow the kernel to neglect time-dependent contributions.
Specification(s): fuel_cycle_kernel_ss
Design: FuelCycleSystemScalarKernel
Issue(s): #329
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.6.4The fuel cycle system kernel shall run with either current or old state inputs.
Specification(s): fuel_cycle_kernel_implicit
Design: FuelCycleSystemScalarKernel
Issue(s): #329
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.6.5The fuel cycle system kernel shall run with either current or old state inputs under steady-state.
Specification(s): fuel_cycle_kernel_implicit_ss
Design: FuelCycleSystemScalarKernel
Issue(s): #329
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.6.6The fuel cycle system kernel shall not run with inconsistent inputs.
Specification(s): fuel_cycle_kernel_inputs_mismatch
Design: FuelCycleSystemScalarKernel
Issue(s): #329
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.6.7The fuel cycle system kernel shall not run with the primary variable listed in inputs.
Specification(s): fuel_cycle_kernel_invalid_coupling
Design: FuelCycleSystemScalarKernel
Issue(s): #329
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.6.8The system shall reproduce a consistent solution to an ODE system of equations modeling the tritium fuel cycle with a built-in AD kernel.
Specification(s): fuel_cycle_kernel_AD
Design: FuelCycleSystemScalarKernel
Issue(s): #329
Collection(s): FUNCTIONAL
Type(s): CSVDiff

tmap8: ADInterfaceSorption / InterfaceSorption
2.8.1The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions.
Specification(s): Sievert_non_ad
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.2The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions using a penalty-enforced flux balance.
Specification(s): Sievert_non_ad_penalty
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.3The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions using automatic differentiation.
Specification(s): Sievert_ad
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.4The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions using automatic differentiation and a penalty-enforced flux balance.
Specification(s): Sievert_ad_penalty
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.5The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions.
Specification(s): Henry_non_ad
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.6The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions using a penalty-enforced flux balance.
Specification(s): Henry_non_ad_penalty
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.7The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions using automatic differentiation.
Specification(s): Henry_ad
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.8The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions using automatic differentiation and a penalty-enforced flux balance.
Specification(s): Henry_ad_penalty
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.9The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions during transient simulations.
Specification(s): Sievert_transient_non_ad
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.10The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions using automatic differentiation during transient simulations.
Specification(s): Sievert_transient_ad
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.11The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions during transient simulations with unit scaling on both variables.
Specification(s): Sievert_transient_non_ad_scaling
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.12The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions using automatic differentiation during transient simulations with unit scaling on both variables.
Specification(s): Sievert_transient_ad_scaling
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.13The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions using a penalty-enforced flux balance during transient simulations with unit scaling on both variables.
Specification(s): Sievert_transient_non_ad_penalty_scaling
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.14The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions using a penalty-enforced flux balance during transient simulations with unit scaling on both variables and provide similar results to the approach without the penalty-enforced flux balance.
Specification(s): Sievert_transient_non_ad_penalty_scaling_comparison
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.15The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions using automatic differentiation and a penalty-enforced flux balance during transient simulations with unit scaling on both variables.
Specification(s): Sievert_transient_ad_penalty_scaling
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.16The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions during transient simulations.
Specification(s): Henry_transient_non_ad
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.17The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions using automatic differentiation during transient simulations.
Specification(s): Henry_transient_ad
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.18The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions during transient simulations with unit scaling on both variables.
Specification(s): Henry_transient_non_ad_scaling
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.19The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions using automatic differentiation during transient simulation with unit scaling on both variables.
Specification(s): Henry_transient_ad_scaling
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.20The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions using a penalty-enforced flux balance during transient simulations with unit scaling on both variables.
Specification(s): Henry_transient_non_ad_penalty_scaling
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.21The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions using a penalty-enforced flux balance during transient simulations with unit scaling on both variables and provide similar results to the approach without the penalty-enforced flux balance.
Specification(s): Henry_transient_non_ad_penalty_scaling_comparison
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.8.22The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions using automatic differentiation and a penalty-enforced flux balance during transient simulations with unit scaling on both variables.
Specification(s): Henry_transient_ad_penalty_scaling
Design: ADInterfaceSorption / InterfaceSorption
Issue(s): #50 #156
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.45.1The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law without any concentration jump at the interface.
Specification(s): ver-1kb_csv_without_concentration_jump
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kb
2.45.2The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law with a concentration jump at the interface.
Specification(s): ver-1kb_csv_concentration_jump
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kb
2.45.3The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law with a concentration jump at the interface to generate csv for use in comparisons with the analytic solution.
Specification(s): ver-1kb_exodus_concentration_jump
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1kb
2.45.4The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kb, modeling a diffusion across a membrane separating two enclosures in accordance with Henry’s law.
Specification(s): ver-1kb_comparison
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1kb
2.46.1The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface.
Specification(s): ver-1kc-1_csv
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kc-1
2.46.2The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with a fine mesh and tight tolerances for higher accuracy.
Specification(s): ver-1kc-1_csv_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kc-1
2.46.3The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with a fine mesh and tight tolerances for higher accuracy and generate an exodus file.
Specification(s): ver-1kc-1_exodus_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1kc-1
2.46.4The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kc-1, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law.
Specification(s): ver-1kc-1_comparison
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1kc-1
2.47.1The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface.
Specification(s): ver-1kc-2_csv
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kc-2
2.47.2The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with tight tolerances for higher accuracy.
Specification(s): ver-1kc-2_csv_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kc-2
2.47.3The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and generate an exodus file with tight tolerances for higher accuracy.
Specification(s): ver-1kc-2_exodus_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1kc-2
2.47.4The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kc-2, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law.
Specification(s): ver-1kc-2_comparison
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1kc-2
2.48.1The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term.
Specification(s): ver-1kd_csv
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kd
2.48.2The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term with tight tolerances for higher accuracy.
Specification(s): ver-1kd_csv_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kd
2.48.3The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term and generate an exodus file with tight tolerances for higher accuracy.
Specification(s): ver-1kd_exodus_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1kd
2.48.4The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kd, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law and a T2 volumetric source term.
Specification(s): ver-1kd_comparison
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1kd

tmap8: ADMatCoupledDefectAnnihilation
2.9.1The system shall compute the annihilation of a concentration variable towards its equilibrium in the material.
Specification(s): ad_mat_coupled_annihilation
Design: ADMatCoupledDefectAnnihilation
Issue(s): #35
Collection(s): FUNCTIONAL
Type(s): Exodiff

tmap8: ADMatReactionFlexible
2.9.2The system shall compute the reaction contribution in the material.
Specification(s): ad_mat_reaction_flexible
Design: ADMatReactionFlexible
Issue(s): #23
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.32.1The system shall be able to model a chemical reaction between two species with the same concentrations and calculate the concentrations of reactants and product as a function of time
Specification(s): binary_reaction_equal_concentrations
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1g
2.32.2The system shall be able to model a chemical reaction between two species with different concentrations and calculate the concentrations of reactants and product as a function of time using the initial conditions from the TMAP4 case
Specification(s): binary_reaction_diff_concentrations_TMAP4
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1g
2.32.3The system shall be able to model a chemical reaction between two species with different concentrations and calculate the concentrations of reactants and product as a function of time using the initial conditions from the TMAP7 case
Specification(s): binary_reaction_diff_concentrations_TMAP7
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1g
2.32.4The system shall be able to model a chemical reaction between two species with the same concentrations and calculate the concentrations of reactants and product as a function of time, to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): binary_reaction_equal_concentrations_csv_diff
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1g
2.32.5The system shall be able to model a chemical reaction between two species with different concentrations using the initial conditions from the TMAP4 case and calculate the concentrations of reactants and product as a function of time to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): binary_reaction_diff_concentrations_csv_diff_TMAP4
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1g
2.32.6The system shall be able to model a chemical reaction between two species with different concentrations using the initial conditions from the TMAP7 case and calculate the concentrations of reactants and product as a function of time to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): binary_reaction_diff_concentrations_csv_diff_TMAP7
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1g
2.32.7The system shall be able to generate comparison plots between the analytical solution and simulated solution of a chemical reaction between two species with same or different concentrations, using the initial conditions from both TMAP4 and TMAP7 cases.
Specification(s): ver-1g_comparison
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1g
2.33.1The system shall be able to model a series of chemical reactions involving three species and calculate the concentrations of each species as a function of time.
Specification(s): ver-1gc
Design: ADMatReactionFlexible
Issue(s): #12 #104
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1gc
2.33.2The system shall be able to model a series of chemical reactions involving three species and calculate the concentrations of each species as a function of time and to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1gc_csv
Design: ADMatReactionFlexible
Issue(s): #12 #104
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1gc
2.33.3The system shall be able to generate comparison plots between the analytical solution and simulated solution of a series of chemical reactions involving three species and calculate the concentrations of each species as a function of time and to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1gc_comparison
Design: ADMatReactionFlexible
Issue(s): #12 #104
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1gc
2.36.1The system shall be able to model a equilibration problem on a reactive surface with equal starting pressures in ratedep condition and to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1ia_csv
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1ia
2.36.2The system shall be able to generate comparison plots between the analytical solution and simulated solution of a equilibration on a reactive surface with equal starting pressures in ratedep condition
Specification(s): ver-1ia_comparison
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1ia
2.37.1The system shall be able to model a equilibration problem on a reactive surface with unequal starting pressures in ratedep condition and to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1ib_csv
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1ib
2.37.2The system shall be able to generate comparison plots between the analytical solution and simulated solution of a equilibration on a reactive surface in ratedep condition with unequal starting pressures.
Specification(s): ver-1ib_comparison
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1ib
2.38.1The system shall be able to model a equilibration problem on a reactive surface in surfdep conditions with low barrier energy and to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1ic_csv
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1ic
2.38.2The system shall be able to generate comparison plots between the analytical solution and simulated solution of a equilibration on a reactive surface in surfdep condition with low barrier energy.
Specification(s): ver-1ic_comparison
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1ic
2.39.1The system shall be able to model a equilibration problem on a reactive surface in surfdep conditions with high barrier energy and to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1id_csv
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1id
2.39.2The system shall be able to generate comparison plots between the analytical solution and simulated solution of a equilibration on a reactive surface in surfdep condition with high barrier energy.
Specification(s): ver-1id_comparison
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1id
2.40.1The system shall be able to model a equilibration problem on a reactive surface in lawdep condition with equal starting pressures and to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1ie_csv
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1ie
2.40.2The system shall be able to generate comparison plots between the analytical solution and simulated solution of a equilibration on a reactive surface in lawdep condition with equal starting pressures.
Specification(s): ver-1ie_comparison
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1ie
2.41.1The system shall be able to model a equilibration problem on a reactive surface in lawdep condition with unequal starting pressures and to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1if_csv
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1if
2.41.2The system shall be able to generate comparison plots between the analytical solution and simulated solution of a equilibration on a reactive surface in lawdep condition with unequal starting pressures.
Specification(s): ver-1if_comparison
Design: ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1if
2.47.1The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface.
Specification(s): ver-1kc-2_csv
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kc-2
2.47.2The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with tight tolerances for higher accuracy.
Specification(s): ver-1kc-2_csv_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kc-2
2.47.3The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and generate an exodus file with tight tolerances for higher accuracy.
Specification(s): ver-1kc-2_exodus_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1kc-2
2.47.4The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kc-2, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law.
Specification(s): ver-1kc-2_comparison
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1kc-2
2.48.1The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term.
Specification(s): ver-1kd_csv
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kd
2.48.2The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term with tight tolerances for higher accuracy.
Specification(s): ver-1kd_csv_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kd
2.48.3The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term and generate an exodus file with tight tolerances for higher accuracy.
Specification(s): ver-1kd_exodus_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1kd
2.48.4The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kd, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law and a T2 volumetric source term.
Specification(s): ver-1kd_comparison
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1kd

tmap8: Pore-Scale Simulations of Tritium Transport Using TMAP8
2.11.1The system shall be able to read a microstructure image and import it to perform a simulation to smoothen the interfaces.
Specification(s): pore_scale_microstructure_formation_slice
Design: Pore-Scale Simulations of Tritium Transport Using TMAP8
Issue(s): #229
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.11.2The system shall be able to import an existing microstructure and perform a simulation of tritium transport during absorption at the pore scale.
Specification(s): pore_scale_transport_slice
Design: Pore-Scale Simulations of Tritium Transport Using TMAP8
Issue(s): #229
Collection(s): FUNCTIONAL
Type(s): Exodiff

tmap8: MatNeumannBC
2.12.1The system shall be able to model deuterium ion implantation in a steel alloy for comparison with experimental results, particularly focusing on the permeation flux.
Specification(s): val-2a_csvdiff
Design: MatNeumannBC
Issue(s): #12 #188
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2a
2.12.2The system shall be able to model deuterium ion implantation in a steel alloy for comparison with experimental results, focused on the full set of simulation output including deuterium concentration, recombination coefficient, and dissociation coefficient.
Specification(s): val-2a_exodiff
Design: MatNeumannBC
Issue(s): #12 #188
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2a
2.12.3The system shall be able to generate comparison plots between the analytical solution and simulated solution of validation case 2a, modeling deuterium ion implantation in a steel alloy.
Specification(s): val-2a_comparison
Design: MatNeumannBC
Issue(s): #12 #188
Collection(s): FUNCTIONAL
Type(s): RunCommand
Validation: val-2a
2.16.1The system shall be able to model permeation of Deuterium from a 0.05 mm thick membrane at 825 K to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2ea_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.2The system shall be able to model permeation of Deuterium from a 0.05 mm thick membrane at 825 K.
Specification(s): val-2ea
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.3The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 825 K to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2eb_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.4The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 825 K.
Specification(s): val-2eb
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.5The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 865 K to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2ec_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.6The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 865 K and generate an exodus file.
Specification(s): val-2ec
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.7The system shall be able to model permeation of mixture gas from a 0.025 mm thin membrane at 870 K using lawdep boundary conditions to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2ed_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.8The system shall be able to model permeation of mixture gas with chemical reaction from a 0.025 mm thin membrane at 870 K using lawdep boundary conditions and generate an exodus file.
Specification(s): val-2ed
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.9The system shall be able to model permeation of mixture gas from a 0.025 mm thin membrane at 870 K using ratedep boundary conditions to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2ee_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.10The system shall be able to model permeation of mixture gas with chemical reaction from a 0.025 mm thin membrane at 870 K using ratedep boundary conditions and generate an exodus file.
Specification(s): val-2ee
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.11The system shall be able to generate comparison plots between the analytical solution and experimental data of validation case 2e, modeling the permeation of Deuterium from a membrane.
Specification(s): ver-2e_comparison
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: val-2e
2.17.1The system shall be able to model self-damaged tungsten effects on deuterium transport and generate CSV data output with a short runtime and coarse mesh testing.
Specification(s): val-2f_light_csv
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.2The system shall be able to model self-damaged tungsten effects on deuterium transport with a short runtime and coarse mesh testing.
Specification(s): val-2f_light_exodus
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2f
2.17.3The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output. Only desorption phase data is compared with every other timestep.
Specification(s): val-2f_heavy_csv_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.4The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability. Only desorption phase data is compared with every other timestep.
Specification(s): val-2f_heavy_exodus_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2f
2.17.5The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output about the temperature for documentation plots.
Specification(s): val-2f_heavy_temperature_csv_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.6The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output, for the infinite recombination case. Only desorption phase data is compared with every other timestep.
Specification(s): val-2f_heavy_csv_inf_recombination_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.7The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output.
Specification(s): val-2f_heavy_csv_bdf2
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.8The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output, for the infinite recombination case.
Specification(s): val-2f_heavy_csv_inf_recombination_bdf2
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.9The system shall be able to generate comparison plots between simulated solutions and experimental data of validation case val-2f, modeling self-damaged tungsten effects on deuterium transport.
Specification(s): val-2f_comparison
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Validation: val-2f
2.20.1The system shall be able to model deuterium transport in self-irradiated tungsten with a 1 nm natural-oxide oxygen-field representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the implicit Euler time integration scheme.
Specification(s): val-2k_natural_oxide_implicit_euler_csvdiff_light
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics MatNeumannBC
Issue(s): #399
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2k
2.20.2The system shall be able to produce the full field solution of a simulation of deuterium transport in self-irradiated tungsten with a 1 nm natural-oxide oxygen-field representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the implicit Euler time integration scheme.
Specification(s): val-2k_natural_oxide_implicit_euler_exodiff_light
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics MatNeumannBC
Issue(s): #399
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2k
2.20.3The system shall be able to model deuterium transport in self-irradiated tungsten with a 1 nm natural-oxide oxygen-field representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the backwards differencing formula of second order (BDF-2) time integration scheme.
Specification(s): val-2k_natural_oxide_bdf2_csvdiff
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics MatNeumannBC
Issue(s): #399
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2k
2.20.4The system shall be able to model deuterium transport in self-irradiated tungsten with a 5 nm oxygen-field oxide representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the backwards differencing formula of second order (BDF-2) time integration scheme.
Specification(s): val-2k_5nm_oxide_bdf2_csvdiff
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics MatNeumannBC
Issue(s): #399
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2k
2.20.5The system shall be able to model deuterium transport in self-irradiated tungsten with a 10 nm oxygen-field oxide representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the backwards differencing formula of second order (BDF-2) time integration scheme.
Specification(s): val-2k_10nm_oxide_bdf2_csvdiff
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics MatNeumannBC
Issue(s): #399
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2k
2.20.6The system shall be able to model deuterium transport in self-irradiated tungsten with a 15 nm oxygen-field oxide representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the backwards differencing formula of second order (BDF-2) time integration scheme.
Specification(s): val-2k_15nm_oxide_bdf2_csvdiff
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics MatNeumannBC
Issue(s): #399
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2k
2.20.7The system shall be able to output the initial deuterium and oxygen concentration profiles for the 15 nm oxygen-field oxide companion case in val-2k, including the mobile and trapped deuterium populations used to initialize the plotted sectioned profile.
Specification(s): val-2k_15nm_oxide_initial_profile_csvdiff
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics MatNeumannBC
Issue(s): #399
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2k
2.20.8The system shall be able to generate comparison plots for the val-2k validation, comparing the natural-oxide, 5 nm, 10 nm, and 15 nm oxygen-field oxide D2 and D2O release cases against the corresponding experimental data when the matching simulation outputs are available.
Specification(s): val-2k_comparison
Design: Species Trapping Physics using a Continuous Galerkin Finite Element discretization / SpeciesTrappingPhysics MatNeumannBC
Issue(s): #399
Collection(s): FUNCTIONAL
Type(s): RunCommand
Validation: val-2k

tmap8: val-2c
2.14.1The system shall be able to model the Test Cell Release Experiment (val-2c) with immediate T2 injection.
Specification(s): val-2c_immediate_injection_csv_implicit-euler
Design: val-2c
Issue(s): #12 #98
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2c
2.14.2The system shall be able to model the Test Cell Release Experiment (val-2c) with immediate T2 injection and properly compute the exodus file.
Specification(s): val-2c_immediate_injection_exodus_implicit-euler
Design: val-2c
Issue(s): #12 #98
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2c
2.14.3The system shall be able to model the Test Cell Release Experiment (val-2c) with delayed T2 injection.
Specification(s): val-2c_delay_csv_implicit-euler
Design: val-2c
Issue(s): #12 #98
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2c
2.14.4The system shall be able to model the Test Cell Release Experiment (val-2c) with delayed T2 injection and properly compute the exodus file.
Specification(s): val-2c_delay_exodus_implicit-euler
Design: val-2c
Issue(s): #12 #98
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2c
2.14.5The system shall be able to model the Test Cell Release Experiment (val-2c) with delayed T2 injection using calibrated model parameters.
Specification(s): val-2c_delay_calibrated_csv_implicit-euler
Design: val-2c
Issue(s): #266
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2c
2.14.6The system shall be able to perform a Parallel Subset Simulation study using a model of the Test Cell Release Experiment (val-2c) with delayed T2 injection.
Specification(s): val-2c_delay_pss_study_csv
Design: val-2c
Issue(s): #266
Collection(s): FUNCTIONAL
Type(s): JSONDiff
Validation: val-2c
2.14.7The system shall be able to generate comparison plots between simulated solutions and experimental data of validation cases val-2c, modeling a Test Cell Release Experiment.
Specification(s): val-2c_delay_comparison
Design: val-2c
Issue(s): #12 #98
Collection(s): FUNCTIONAL
Type(s): RunCommand
Validation: val-2c
2.14.8The system shall be able to model the Test Cell Release Experiment (val-2c) with immediate T2 injection to generate output data for documentation.
Specification(s): val-2c_immediate_injection_csv_bdf2
Design: val-2c
Issue(s): #12 #98
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2c
2.14.9The system shall be able to model the Test Cell Release Experiment (val-2c) with delayed T2 injection to generate output data for documentation.
Specification(s): val-2c_delay_csv_bdf2
Design: val-2c
Issue(s): #12 #98
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2c
2.14.10The system shall be able to model the Test Cell Release Experiment (val-2c) with delayed T2 injection using calibrated model parameters to generate output data for documentation.
Specification(s): val-2c_delay_calibrated_csv_bdf2
Design: val-2c
Issue(s): #12 #98
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2c

tmap8: TrappingNodalKernel
2.15.1The system shall be able to model thermal desorption spectroscopy on Tungsten.
Specification(s): val-2d_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel ADDirichletBC
Issue(s): #12 #203
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2d
2.15.2The system shall be able to model thermal desorption spectroscopy on Tungsten to include full set of simulation outputs, including tritium concentration, diffusion flux, and trapping properties.
Specification(s): val-2d_exodiff
Design: TrappingNodalKernel ReleasingNodalKernel ADDirichletBC
Issue(s): #12 #203
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2d
2.15.3The system shall be able to model thermal desorption spectroscopy on Tungsten with fine mesh and time step to compare with the desorption flux from experiment results.
Specification(s): val-2d_heavy_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel ADDirichletBC
Issue(s): #12 #203
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2d
2.15.4The system shall be able to model thermal desorption spectroscopy on Tungsten with fine mesh and time step to include full set of simulation outputs, including tritium concentration, diffusion flux, and trapping properties.
Specification(s): val-2d_heavy_exodiff
Design: TrappingNodalKernel ReleasingNodalKernel ADDirichletBC
Issue(s): #12 #203
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2d
2.15.5The system shall be able to generate comparison plots between the analytical solution and simulated solution of validation case 2d, modeling thermal desorption spectroscopy on Tungsten.
Specification(s): val-2d_comparison
Design: TrappingNodalKernel ReleasingNodalKernel ADDirichletBC
Issue(s): #12 #203
Collection(s): FUNCTIONAL
Type(s): RunCommand
Validation: val-2d
2.17.1The system shall be able to model self-damaged tungsten effects on deuterium transport and generate CSV data output with a short runtime and coarse mesh testing.
Specification(s): val-2f_light_csv
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.2The system shall be able to model self-damaged tungsten effects on deuterium transport with a short runtime and coarse mesh testing.
Specification(s): val-2f_light_exodus
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2f
2.17.3The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output. Only desorption phase data is compared with every other timestep.
Specification(s): val-2f_heavy_csv_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.4The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability. Only desorption phase data is compared with every other timestep.
Specification(s): val-2f_heavy_exodus_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2f
2.17.5The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output about the temperature for documentation plots.
Specification(s): val-2f_heavy_temperature_csv_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.6The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output, for the infinite recombination case. Only desorption phase data is compared with every other timestep.
Specification(s): val-2f_heavy_csv_inf_recombination_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.7The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output.
Specification(s): val-2f_heavy_csv_bdf2
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.8The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output, for the infinite recombination case.
Specification(s): val-2f_heavy_csv_inf_recombination_bdf2
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.9The system shall be able to generate comparison plots between simulated solutions and experimental data of validation case val-2f, modeling self-damaged tungsten effects on deuterium transport.
Specification(s): val-2f_comparison
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Validation: val-2f
2.18.1The system shall be able to model deuterium transport in proton-conducting ceramics with trapping effects to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2g_trapping_initial_light_csv
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #349
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2g
2.18.2The system shall be able to model deuterium transport in proton-conducting ceramics with trapping effects.
Specification(s): val-2g_trapping_initial_light_exodus
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #349
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2g
2.18.3The system shall be able to model deuterium transport in proton-conducting ceramics without trapping effects under fine mesh and time step to generate CSV data output.
Specification(s): val-2g_no_trapping_initial_csv
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #349
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2g
2.18.4The system shall be able to model deuterium transport in proton-conducting ceramics with trapping effects under fine mesh and time step to generate CSV data output.
Specification(s): val-2g_trapping_initial_csv
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #349
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2g
2.18.5The system shall be able to model deuterium transport in proton-conducting ceramics with trapping effects using calibrated parameters under fine mesh and time step to generate CSV data output.
Specification(s): val-2g_trapping_calibrated_csv
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #349
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2g
2.18.6The system shall be able to perform a Parallel Subset Simulation optimization study for deuterium transport in proton-conducting ceramics.
Specification(s): val-2g_pss_optimization
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #349
Collection(s): FUNCTIONAL
Type(s): JSONDiff
Validation: val-2g
2.18.7The system shall be able to generate comparison plots between simulated solutions and experimental data of validation case val-2g, modeling deuterium transport in proton-conducting ceramics.
Specification(s): val-2g_comparison
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #349
Collection(s): FUNCTIONAL
Type(s): RunCommand
Validation: val-2g
2.19.1The system shall be able to model tritium TDS from Li2TiO3 with a fine mesh to compare with experimental desorption data from Kobayashi et al. (2015).
Specification(s): val-2j_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12 #400
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2j
2.19.2The system shall model tritium TDS from Li2TiO3 with Bayesian-optimized parameters.
Specification(s): val-2j_optimized_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12 #400
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2j
2.19.3The system shall model tritium TDS from Li2TiO3 with Bayesian-optimized parameters including full simulation outputs.
Specification(s): val-2j_optimized_exodiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12 #400
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2j
2.19.4The system shall generate comparison plots between TMAP8 simulation and experimental TDS data for Li2TiO3 Sample E.
Specification(s): val-2j_comparison
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12 #400
Collection(s): FUNCTIONAL
Type(s): RunCommand
Validation: val-2j
2.19.5The system shall perform Bayesian optimization of TDS model parameters for Li2TiO3.
Specification(s): val-2j_bayesian_json
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12 #400
Collection(s): FUNCTIONAL
Type(s): JSONDiff
Validation: val-2j
2.24.1The system shall be able to model a breakthrough problem where diffusion is the rate limiting process.
Specification(s): ver-1d_diffusion_limited
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1d
2.24.2The system shall be able to model a breakthrough problem where diffusion is the rate limiting process to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1d_diffusion_limited_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1d
2.24.3The system shall be able to model a breakthrough problem where diffusion is the rate limiting process, with the fine mesh and time step required to match the analytical solution for the verification case.
Specification(s): ver-1d_diffusion_limited_heavy
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1d
2.24.4The system shall be able to model a breakthrough problem where diffusion is the rate limiting process, with the fine mesh and time step required to match the analytical solution for the verification case and generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1d_diffusion_limited_heavy_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1d
2.24.5The system shall be able to model a breakthrough problem where diffusion is the rate limiting process using the Physics and Components syntax.
Specification(s): diffusion_limited_components
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1d
2.24.6The system shall be able to model a breakthrough problem where diffusion is the rate limiting process using the Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution.
Specification(s): diffusion_limited_components_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1d
2.24.7The system shall be able to model a breakthrough problem where trapping is the rate limiting process.
Specification(s): ver-1d_trapping_limited
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1d
2.24.8The system shall be able to model a breakthrough problem where trapping is the rate limiting process to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1d_trapping_limited_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1d
2.24.9The system shall be able to model a breakthrough problem where trapping is the rate limiting process with the fine mesh and time step required to match the analytical solution for the verification case.
Specification(s): ver-1d_trapping_limited_heavy
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1d
2.24.10The system shall be able to model a breakthrough problem where trapping is the rate limiting process with the fine mesh and time step required to match the analytical solution for the verification case and generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1d_trapping_limited_heavy_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1d
2.24.11The system shall be able to generate comparison plots between the analytical solution and simulated solutions of verification cases 1d, modeling a breakthrough problem where diffusion and trapping are the rate limiting processes.
Specification(s): ver-1d_comparison
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1d
2.25.1The system shall be able to model a breakthrough problem of multiple traps.
Specification(s): ver-1dc_limited
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1dc
2.25.2The system shall be able to model a breakthrough problem of multiple traps to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1dc_limited_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1dc
2.25.3The system shall be able to model a breakthrough problem of multiple traps, with the fine mesh and time step required to match the analytical solution for the verification case.
Specification(s): ver-1dc_limited_heavy
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1dc
2.25.4The system shall be able to model a breakthrough problem of multiple traps, with the fine mesh and time step required to match the analytical solution for the verification case and generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1dc_limited_heavy_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1dc
2.25.5The system shall be able to generate comparison plots between the analytical solution and simulated solutions of verification cases 1dc, modeling a breakthrough problem of multiple traps.
Specification(s): ver-1d_comparison
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1dc
2.25.6The system shall show second order spatial convergence for a diffusion-trapping-release test case.
Specification(s): ver-1dc-mms
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): MMSTest
Verification: ver-1dc
2.25.7The system shall be able to model a breakthrough problem of multiple traps using the Physics and Components shorthand syntax.
Specification(s): ver-1dc_limited-components
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1dc
2.25.8The system shall be able to model a breakthrough problem of multiple traps using the Physics and Components shorthand syntax to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1dc_limited-components_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1dc
2.26.1The system shall be able to model a breakthrough problem without traps.
Specification(s): ver-1dd
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1dd
2.26.2The system shall be able to model a breakthrough problem without traps, and generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1dd_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1dd
2.26.3The system shall be able to generate comparison plots between the analytical solution and simulated solutions of verification cases 1dd, modeling a breakthrough problem without traps.
Specification(s): ver-1d_comparison
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1dd
2.26.4The system shall be able to model a breakthrough problem without traps using the Physics and Components shorthand syntax to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1dd_csvdiff-components
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1dd
2.26.5The system shall be able to model a breakthrough problem without traps using the Physics and Components shorthand syntax.
Specification(s): ver-1dd-components
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1dd
2.43.1The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1jb_csvdiff
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.2The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps and output the profiles of concentrations.
Specification(s): ver-1jb_csvdiff_profile
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.3The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps with equivalent initial mobile and trapped tritium concentration, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1jb_csvdiff_equivalent_concentrations
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.4The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps with equivalent initial mobile and trapped tritium concentration and output the profiles of concentrations.
Specification(s): ver-1jb_csvdiff_profile_equivalent_concentrations
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.5The system shall be able to generate comparison plots between the analytical solution and simulated solution when modeling decay of tritium and associated growth of He in a diffusion segment with distributed traps.
Specification(s): ver-1jb_comparison
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1jb

tmap8: ReleasingNodalKernel
2.15.1The system shall be able to model thermal desorption spectroscopy on Tungsten.
Specification(s): val-2d_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel ADDirichletBC
Issue(s): #12 #203
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2d
2.15.2The system shall be able to model thermal desorption spectroscopy on Tungsten to include full set of simulation outputs, including tritium concentration, diffusion flux, and trapping properties.
Specification(s): val-2d_exodiff
Design: TrappingNodalKernel ReleasingNodalKernel ADDirichletBC
Issue(s): #12 #203
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2d
2.15.3The system shall be able to model thermal desorption spectroscopy on Tungsten with fine mesh and time step to compare with the desorption flux from experiment results.
Specification(s): val-2d_heavy_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel ADDirichletBC
Issue(s): #12 #203
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2d
2.15.4The system shall be able to model thermal desorption spectroscopy on Tungsten with fine mesh and time step to include full set of simulation outputs, including tritium concentration, diffusion flux, and trapping properties.
Specification(s): val-2d_heavy_exodiff
Design: TrappingNodalKernel ReleasingNodalKernel ADDirichletBC
Issue(s): #12 #203
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2d
2.15.5The system shall be able to generate comparison plots between the analytical solution and simulated solution of validation case 2d, modeling thermal desorption spectroscopy on Tungsten.
Specification(s): val-2d_comparison
Design: TrappingNodalKernel ReleasingNodalKernel ADDirichletBC
Issue(s): #12 #203
Collection(s): FUNCTIONAL
Type(s): RunCommand
Validation: val-2d
2.17.1The system shall be able to model self-damaged tungsten effects on deuterium transport and generate CSV data output with a short runtime and coarse mesh testing.
Specification(s): val-2f_light_csv
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.2The system shall be able to model self-damaged tungsten effects on deuterium transport with a short runtime and coarse mesh testing.
Specification(s): val-2f_light_exodus
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2f
2.17.3The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output. Only desorption phase data is compared with every other timestep.
Specification(s): val-2f_heavy_csv_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.4The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability. Only desorption phase data is compared with every other timestep.
Specification(s): val-2f_heavy_exodus_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2f
2.17.5The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output about the temperature for documentation plots.
Specification(s): val-2f_heavy_temperature_csv_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.6The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output, for the infinite recombination case. Only desorption phase data is compared with every other timestep.
Specification(s): val-2f_heavy_csv_inf_recombination_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.7The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output.
Specification(s): val-2f_heavy_csv_bdf2
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.8The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output, for the infinite recombination case.
Specification(s): val-2f_heavy_csv_inf_recombination_bdf2
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.9The system shall be able to generate comparison plots between simulated solutions and experimental data of validation case val-2f, modeling self-damaged tungsten effects on deuterium transport.
Specification(s): val-2f_comparison
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Validation: val-2f
2.18.1The system shall be able to model deuterium transport in proton-conducting ceramics with trapping effects to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2g_trapping_initial_light_csv
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #349
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2g
2.18.2The system shall be able to model deuterium transport in proton-conducting ceramics with trapping effects.
Specification(s): val-2g_trapping_initial_light_exodus
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #349
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2g
2.18.3The system shall be able to model deuterium transport in proton-conducting ceramics without trapping effects under fine mesh and time step to generate CSV data output.
Specification(s): val-2g_no_trapping_initial_csv
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #349
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2g
2.18.4The system shall be able to model deuterium transport in proton-conducting ceramics with trapping effects under fine mesh and time step to generate CSV data output.
Specification(s): val-2g_trapping_initial_csv
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #349
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2g
2.18.5The system shall be able to model deuterium transport in proton-conducting ceramics with trapping effects using calibrated parameters under fine mesh and time step to generate CSV data output.
Specification(s): val-2g_trapping_calibrated_csv
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #349
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2g
2.18.6The system shall be able to perform a Parallel Subset Simulation optimization study for deuterium transport in proton-conducting ceramics.
Specification(s): val-2g_pss_optimization
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #349
Collection(s): FUNCTIONAL
Type(s): JSONDiff
Validation: val-2g
2.18.7The system shall be able to generate comparison plots between simulated solutions and experimental data of validation case val-2g, modeling deuterium transport in proton-conducting ceramics.
Specification(s): val-2g_comparison
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #349
Collection(s): FUNCTIONAL
Type(s): RunCommand
Validation: val-2g
2.19.1The system shall be able to model tritium TDS from Li2TiO3 with a fine mesh to compare with experimental desorption data from Kobayashi et al. (2015).
Specification(s): val-2j_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12 #400
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2j
2.19.2The system shall model tritium TDS from Li2TiO3 with Bayesian-optimized parameters.
Specification(s): val-2j_optimized_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12 #400
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2j
2.19.3The system shall model tritium TDS from Li2TiO3 with Bayesian-optimized parameters including full simulation outputs.
Specification(s): val-2j_optimized_exodiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12 #400
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2j
2.19.4The system shall generate comparison plots between TMAP8 simulation and experimental TDS data for Li2TiO3 Sample E.
Specification(s): val-2j_comparison
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12 #400
Collection(s): FUNCTIONAL
Type(s): RunCommand
Validation: val-2j
2.19.5The system shall perform Bayesian optimization of TDS model parameters for Li2TiO3.
Specification(s): val-2j_bayesian_json
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12 #400
Collection(s): FUNCTIONAL
Type(s): JSONDiff
Validation: val-2j
2.24.1The system shall be able to model a breakthrough problem where diffusion is the rate limiting process.
Specification(s): ver-1d_diffusion_limited
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1d
2.24.2The system shall be able to model a breakthrough problem where diffusion is the rate limiting process to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1d_diffusion_limited_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1d
2.24.3The system shall be able to model a breakthrough problem where diffusion is the rate limiting process, with the fine mesh and time step required to match the analytical solution for the verification case.
Specification(s): ver-1d_diffusion_limited_heavy
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1d
2.24.4The system shall be able to model a breakthrough problem where diffusion is the rate limiting process, with the fine mesh and time step required to match the analytical solution for the verification case and generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1d_diffusion_limited_heavy_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1d
2.24.5The system shall be able to model a breakthrough problem where diffusion is the rate limiting process using the Physics and Components syntax.
Specification(s): diffusion_limited_components
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1d
2.24.6The system shall be able to model a breakthrough problem where diffusion is the rate limiting process using the Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution.
Specification(s): diffusion_limited_components_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1d
2.24.7The system shall be able to model a breakthrough problem where trapping is the rate limiting process.
Specification(s): ver-1d_trapping_limited
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1d
2.24.8The system shall be able to model a breakthrough problem where trapping is the rate limiting process to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1d_trapping_limited_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1d
2.24.9The system shall be able to model a breakthrough problem where trapping is the rate limiting process with the fine mesh and time step required to match the analytical solution for the verification case.
Specification(s): ver-1d_trapping_limited_heavy
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1d
2.24.10The system shall be able to model a breakthrough problem where trapping is the rate limiting process with the fine mesh and time step required to match the analytical solution for the verification case and generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1d_trapping_limited_heavy_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1d
2.24.11The system shall be able to generate comparison plots between the analytical solution and simulated solutions of verification cases 1d, modeling a breakthrough problem where diffusion and trapping are the rate limiting processes.
Specification(s): ver-1d_comparison
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1d
2.25.1The system shall be able to model a breakthrough problem of multiple traps.
Specification(s): ver-1dc_limited
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1dc
2.25.2The system shall be able to model a breakthrough problem of multiple traps to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1dc_limited_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1dc
2.25.3The system shall be able to model a breakthrough problem of multiple traps, with the fine mesh and time step required to match the analytical solution for the verification case.
Specification(s): ver-1dc_limited_heavy
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1dc
2.25.4The system shall be able to model a breakthrough problem of multiple traps, with the fine mesh and time step required to match the analytical solution for the verification case and generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1dc_limited_heavy_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1dc
2.25.5The system shall be able to generate comparison plots between the analytical solution and simulated solutions of verification cases 1dc, modeling a breakthrough problem of multiple traps.
Specification(s): ver-1d_comparison
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1dc
2.25.6The system shall show second order spatial convergence for a diffusion-trapping-release test case.
Specification(s): ver-1dc-mms
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): MMSTest
Verification: ver-1dc
2.25.7The system shall be able to model a breakthrough problem of multiple traps using the Physics and Components shorthand syntax.
Specification(s): ver-1dc_limited-components
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1dc
2.25.8The system shall be able to model a breakthrough problem of multiple traps using the Physics and Components shorthand syntax to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1dc_limited-components_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1dc
2.26.1The system shall be able to model a breakthrough problem without traps.
Specification(s): ver-1dd
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1dd
2.26.2The system shall be able to model a breakthrough problem without traps, and generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1dd_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1dd
2.26.3The system shall be able to generate comparison plots between the analytical solution and simulated solutions of verification cases 1dd, modeling a breakthrough problem without traps.
Specification(s): ver-1d_comparison
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1dd
2.26.4The system shall be able to model a breakthrough problem without traps using the Physics and Components shorthand syntax to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1dd_csvdiff-components
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1dd
2.26.5The system shall be able to model a breakthrough problem without traps using the Physics and Components shorthand syntax.
Specification(s): ver-1dd-components
Design: TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1dd
2.43.1The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1jb_csvdiff
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.2The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps and output the profiles of concentrations.
Specification(s): ver-1jb_csvdiff_profile
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.3The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps with equivalent initial mobile and trapped tritium concentration, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1jb_csvdiff_equivalent_concentrations
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.4The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps with equivalent initial mobile and trapped tritium concentration and output the profiles of concentrations.
Specification(s): ver-1jb_csvdiff_profile_equivalent_concentrations
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.5The system shall be able to generate comparison plots between the analytical solution and simulated solution when modeling decay of tritium and associated growth of He in a diffusion segment with distributed traps.
Specification(s): ver-1jb_comparison
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1jb

tmap8: ADDirichletBC
2.15.1The system shall be able to model thermal desorption spectroscopy on Tungsten.
Specification(s): val-2d_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel ADDirichletBC
Issue(s): #12 #203
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2d
2.15.2The system shall be able to model thermal desorption spectroscopy on Tungsten to include full set of simulation outputs, including tritium concentration, diffusion flux, and trapping properties.
Specification(s): val-2d_exodiff
Design: TrappingNodalKernel ReleasingNodalKernel ADDirichletBC
Issue(s): #12 #203
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2d
2.15.3The system shall be able to model thermal desorption spectroscopy on Tungsten with fine mesh and time step to compare with the desorption flux from experiment results.
Specification(s): val-2d_heavy_csvdiff
Design: TrappingNodalKernel ReleasingNodalKernel ADDirichletBC
Issue(s): #12 #203
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2d
2.15.4The system shall be able to model thermal desorption spectroscopy on Tungsten with fine mesh and time step to include full set of simulation outputs, including tritium concentration, diffusion flux, and trapping properties.
Specification(s): val-2d_heavy_exodiff
Design: TrappingNodalKernel ReleasingNodalKernel ADDirichletBC
Issue(s): #12 #203
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2d
2.15.5The system shall be able to generate comparison plots between the analytical solution and simulated solution of validation case 2d, modeling thermal desorption spectroscopy on Tungsten.
Specification(s): val-2d_comparison
Design: TrappingNodalKernel ReleasingNodalKernel ADDirichletBC
Issue(s): #12 #203
Collection(s): FUNCTIONAL
Type(s): RunCommand
Validation: val-2d

tmap8: MatReaction
2.16.1The system shall be able to model permeation of Deuterium from a 0.05 mm thick membrane at 825 K to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2ea_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.2The system shall be able to model permeation of Deuterium from a 0.05 mm thick membrane at 825 K.
Specification(s): val-2ea
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.3The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 825 K to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2eb_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.4The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 825 K.
Specification(s): val-2eb
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.5The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 865 K to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2ec_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.6The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 865 K and generate an exodus file.
Specification(s): val-2ec
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.7The system shall be able to model permeation of mixture gas from a 0.025 mm thin membrane at 870 K using lawdep boundary conditions to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2ed_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.8The system shall be able to model permeation of mixture gas with chemical reaction from a 0.025 mm thin membrane at 870 K using lawdep boundary conditions and generate an exodus file.
Specification(s): val-2ed
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.9The system shall be able to model permeation of mixture gas from a 0.025 mm thin membrane at 870 K using ratedep boundary conditions to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2ee_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.10The system shall be able to model permeation of mixture gas with chemical reaction from a 0.025 mm thin membrane at 870 K using ratedep boundary conditions and generate an exodus file.
Specification(s): val-2ee
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.11The system shall be able to generate comparison plots between the analytical solution and experimental data of validation case 2e, modeling the permeation of Deuterium from a membrane.
Specification(s): ver-2e_comparison
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: val-2e
2.42.1The system shall be able to model decay of tritium and associated growth of helium in a diffusion segment and generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1ja_csvdiff
Design: ver-1ja MatReaction
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1ja
2.42.2The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1ja, which models decay of tritium and associated growth of helium in a diffusion segment.
Specification(s): ver-1ja_comparison
Design: ver-1ja MatReaction
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1ja
2.43.1The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1jb_csvdiff
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.2The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps and output the profiles of concentrations.
Specification(s): ver-1jb_csvdiff_profile
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.3The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps with equivalent initial mobile and trapped tritium concentration, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1jb_csvdiff_equivalent_concentrations
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.4The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps with equivalent initial mobile and trapped tritium concentration and output the profiles of concentrations.
Specification(s): ver-1jb_csvdiff_profile_equivalent_concentrations
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.5The system shall be able to generate comparison plots between the analytical solution and simulated solution when modeling decay of tritium and associated growth of He in a diffusion segment with distributed traps.
Specification(s): ver-1jb_comparison
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1jb

tmap8: MatBodyForce
2.16.1The system shall be able to model permeation of Deuterium from a 0.05 mm thick membrane at 825 K to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2ea_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.2The system shall be able to model permeation of Deuterium from a 0.05 mm thick membrane at 825 K.
Specification(s): val-2ea
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.3The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 825 K to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2eb_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.4The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 825 K.
Specification(s): val-2eb
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.5The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 865 K to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2ec_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.6The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 865 K and generate an exodus file.
Specification(s): val-2ec
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.7The system shall be able to model permeation of mixture gas from a 0.025 mm thin membrane at 870 K using lawdep boundary conditions to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2ed_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.8The system shall be able to model permeation of mixture gas with chemical reaction from a 0.025 mm thin membrane at 870 K using lawdep boundary conditions and generate an exodus file.
Specification(s): val-2ed
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.9The system shall be able to model permeation of mixture gas from a 0.025 mm thin membrane at 870 K using ratedep boundary conditions to generate CSV data for use in comparisons with the experimental data.
Specification(s): val-2ee_csvdiff
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: val-2e
2.16.10The system shall be able to model permeation of mixture gas with chemical reaction from a 0.025 mm thin membrane at 870 K using ratedep boundary conditions and generate an exodus file.
Specification(s): val-2ee
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: val-2e
2.16.11The system shall be able to generate comparison plots between the analytical solution and experimental data of validation case 2e, modeling the permeation of Deuterium from a membrane.
Specification(s): ver-2e_comparison
Design: MatReaction MatBodyForce EquilibriumBC MatNeumannBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: val-2e

tmap8: CoefCoupledTimeDerivative
2.17.1The system shall be able to model self-damaged tungsten effects on deuterium transport and generate CSV data output with a short runtime and coarse mesh testing.
Specification(s): val-2f_light_csv
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.2The system shall be able to model self-damaged tungsten effects on deuterium transport with a short runtime and coarse mesh testing.
Specification(s): val-2f_light_exodus
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2f
2.17.3The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output. Only desorption phase data is compared with every other timestep.
Specification(s): val-2f_heavy_csv_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.4The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability. Only desorption phase data is compared with every other timestep.
Specification(s): val-2f_heavy_exodus_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2f
2.17.5The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output about the temperature for documentation plots.
Specification(s): val-2f_heavy_temperature_csv_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.6The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output, for the infinite recombination case. Only desorption phase data is compared with every other timestep.
Specification(s): val-2f_heavy_csv_inf_recombination_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.7The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output.
Specification(s): val-2f_heavy_csv_bdf2
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.8The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output, for the infinite recombination case.
Specification(s): val-2f_heavy_csv_inf_recombination_bdf2
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.9The system shall be able to generate comparison plots between simulated solutions and experimental data of validation case val-2f, modeling self-damaged tungsten effects on deuterium transport.
Specification(s): val-2f_comparison
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Validation: val-2f

tmap8: TimeDerivativeNodalKernel
2.17.1The system shall be able to model self-damaged tungsten effects on deuterium transport and generate CSV data output with a short runtime and coarse mesh testing.
Specification(s): val-2f_light_csv
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.2The system shall be able to model self-damaged tungsten effects on deuterium transport with a short runtime and coarse mesh testing.
Specification(s): val-2f_light_exodus
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2f
2.17.3The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output. Only desorption phase data is compared with every other timestep.
Specification(s): val-2f_heavy_csv_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.4The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability. Only desorption phase data is compared with every other timestep.
Specification(s): val-2f_heavy_exodus_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Validation: val-2f
2.17.5The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output about the temperature for documentation plots.
Specification(s): val-2f_heavy_temperature_csv_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.6The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output, for the infinite recombination case. Only desorption phase data is compared with every other timestep.
Specification(s): val-2f_heavy_csv_inf_recombination_implicit-euler
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.7The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output.
Specification(s): val-2f_heavy_csv_bdf2
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.8The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output, for the infinite recombination case.
Specification(s): val-2f_heavy_csv_inf_recombination_bdf2
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Validation: val-2f
2.17.9The system shall be able to generate comparison plots between simulated solutions and experimental data of validation case val-2f, modeling self-damaged tungsten effects on deuterium transport.
Specification(s): val-2f_comparison
Design: MatNeumannBC CoefCoupledTimeDerivative TimeDerivativeNodalKernel TrappingNodalKernel ReleasingNodalKernel
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Validation: val-2f

tmap8: EnclosureSinkScalarKernel
2.21.1The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure.
Specification(s): ver-1a
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1a
2.21.2The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1a_csvdiff
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1a
2.21.3The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure using component syntax to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1a-components
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1a
2.21.4The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure, with the fine mesh and timestep required to match the analytical solution.
Specification(s): ver-1a_heavy
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1a
2.21.5The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1a_heavy_csvdiff
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1a
2.21.6The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1a, modeling species diffusion through a structure, originating from a depleting source enclosure.
Specification(s): ver-1a_comparison
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1a

tmap8: PressureReleaseFluxIntegral
2.21.1The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure.
Specification(s): ver-1a
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1a
2.21.2The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1a_csvdiff
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1a
2.21.3The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure using component syntax to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1a-components
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1a
2.21.4The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure, with the fine mesh and timestep required to match the analytical solution.
Specification(s): ver-1a_heavy
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1a
2.21.5The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1a_heavy_csvdiff
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1a
2.21.6The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1a, modeling species diffusion through a structure, originating from a depleting source enclosure.
Specification(s): ver-1a_comparison
Design: EnclosureSinkScalarKernel PressureReleaseFluxIntegral EquilibriumBC
Issue(s): #12 #75
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1a

tmap8: Diffusion
2.22.1The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source.
Specification(s): ver-1b
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1b
2.22.2The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1b_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1b
2.22.3The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source using a Physics and Components syntax.
Specification(s): ver-1b-components
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1b
2.22.4The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source using a Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1b-components_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1b
2.22.5The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source with the fine mesh and time step required to match the analytical solution.
Specification(s): ver-1b_heavy
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1b
2.22.6The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1b_heavy_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1b
2.22.7The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration.
Specification(s): ver-1b_heavy_lineplot
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1b
2.22.8The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1b, modeling transient diffusion through a slab with a constant concentration boundary condition as the species source.
Specification(s): ver-1b_comparison
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1b
2.23.1The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion with boundary conditions consistent with TMAP4.
Specification(s): ver-1c_TMAP4
Design: Diffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1c
2.23.2The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion with boundary conditions consistent with TMAP7
Specification(s): ver-1c_TMAP7
Design: Diffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1c
2.23.3The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion, using a Physics and Components syntax.
Specification(s): ver-1c-components
Design: Diffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1c
2.23.4The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion to generate CSV data for use in comparisons with the analytic solution over time for the TMAP4 verification case.
Specification(s): ver-1c_TMAP4_csvdiff
Design: Diffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1c
2.23.5The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion to generate CSV data for use in comparisons with the analytic solution over time for the TMAP7 verification case.
Specification(s): ver-1c_TMAP7_csvdiff
Design: Diffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1c
2.23.6The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion using a Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution over time for the TMAP7 verification case.
Specification(s): ver-1c-components_csvdiff
Design: Diffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1c
2.23.7The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1c, modeling species permeation into an unloaded portion of a slab from a pre-loaded portion for both the TMAP4 and TMAP7 verification cases.
Specification(s): ver-1c_comparison
Design: Diffusion TimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1c
2.27.1The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source.
Specification(s): ver-1e
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1e
2.27.2The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1e_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.3The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, using the shorthand Physics and Components syntax.
Specification(s): ver-1e-component
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1e
2.27.4The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, using the shorthand Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1e-component_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.5The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution for the TMAP4 verification case.
Specification(s): ver-1e_TMAP4_heavy
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1e
2.27.6The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution for the TMAP7 verification case.
Specification(s): ver-1e_TMAP7_heavy
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1e
2.27.7The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time for the TMAP4 verification case.
Specification(s): ver-1e_TMAP4_heavy_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.8The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time for the TMAP7 verification case.
Specification(s): ver-1e_TMAP7_heavy_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.9The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration for the TMAP4 verification case.
Specification(s): ver-1e_TMAP4_heavy_lineplot
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.10The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration for the TMAP7 verification case.
Specification(s): ver-1e_TMAP7_heavy_lineplot
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.11The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1e, modeling transient diffusion through a composite slab with a constant concentration boundary condition as the species source for both the TMAP4 and TMAP7 verification cases.
Specification(s): ver-1e_comparison
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1e

tmap8: DirichletBC
2.22.1The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source.
Specification(s): ver-1b
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1b
2.22.2The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1b_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1b
2.22.3The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source using a Physics and Components syntax.
Specification(s): ver-1b-components
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1b
2.22.4The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source using a Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1b-components_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1b
2.22.5The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source with the fine mesh and time step required to match the analytical solution.
Specification(s): ver-1b_heavy
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1b
2.22.6The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1b_heavy_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1b
2.22.7The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration.
Specification(s): ver-1b_heavy_lineplot
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1b
2.22.8The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1b, modeling transient diffusion through a slab with a constant concentration boundary condition as the species source.
Specification(s): ver-1b_comparison
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1b
2.27.1The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source.
Specification(s): ver-1e
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1e
2.27.2The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1e_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.3The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, using the shorthand Physics and Components syntax.
Specification(s): ver-1e-component
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1e
2.27.4The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, using the shorthand Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1e-component_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.5The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution for the TMAP4 verification case.
Specification(s): ver-1e_TMAP4_heavy
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1e
2.27.6The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution for the TMAP7 verification case.
Specification(s): ver-1e_TMAP7_heavy
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1e
2.27.7The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time for the TMAP4 verification case.
Specification(s): ver-1e_TMAP4_heavy_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.8The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time for the TMAP7 verification case.
Specification(s): ver-1e_TMAP7_heavy_csvdiff
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.9The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration for the TMAP4 verification case.
Specification(s): ver-1e_TMAP4_heavy_lineplot
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.10The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration for the TMAP7 verification case.
Specification(s): ver-1e_TMAP7_heavy_lineplot
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1e
2.27.11The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1e, modeling transient diffusion through a composite slab with a constant concentration boundary condition as the species source for both the TMAP4 and TMAP7 verification cases.
Specification(s): ver-1e_comparison
Design: Diffusion TimeDerivative DirichletBC
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1e

tmap8: HeatConduction
2.28.1The system shall be able to model heat conduction in a slab that has heat generation
Specification(s): ver-1fa
Design: HeatConduction HeatConductionTimeDerivative HeatSource
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fa
2.28.2The system shall be able to model heat conduction in a slab that has heat generation using the Component and Physics syntax.
Specification(s): ver-1fa-physics
Design: HeatConduction HeatConductionTimeDerivative HeatSource
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fa
2.28.3The system shall be able to model heat conduction in a slab that has heat generation to generate CSV data for use in comparisons with the analytic solution for the profile concentration.
Specification(s): ver-1fa_lineplot
Design: HeatConduction HeatConductionTimeDerivative HeatSource
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fa
2.28.4The system shall be able to model heat conduction in a slab that has heat generation using the Component and Physics syntax to generate CSV data for use in comparisons with the analytic solution for the profile concentration.
Specification(s): ver-1fa-physics_lineplot_csvdiff
Design: HeatConduction HeatConductionTimeDerivative HeatSource
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fa
2.28.5The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1fa, to model heat conduction in a slab that has heat generation.
Specification(s): ver-1fa_comparison
Design: HeatConduction HeatConductionTimeDerivative HeatSource
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1fa
2.29.1The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends
Specification(s): ver-1fb
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fb
2.29.2The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends to generate CSV data at time of 0.1 s for use in comparison with analytical solution.
Specification(s): ver-1fb_csvdiff_0pt1sec
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fb
2.29.3The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends to generate CSV data at time of 0.5 s for use in comparison with analytical solution.
Specification(s): ver-1fb_csvdiff_0pt5sec
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fb
2.29.4The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends to generate CSV data at time of 1.0 s for use in comparison with analytical solution.
Specification(s): ver-1fb_csvdiff_1pt0sec
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fb
2.29.5The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends to generate CSV data at time of 5.0 s for use in comparison with analytical solution.
Specification(s): ver-1fb_csvdiff_5pt0sec
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fb
2.29.6The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1fb, modeling thermal transient in a slab with fixed temperatures at both the ends.
Specification(s): ver-1fb_comparison
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1fb
2.29.7The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends using the component and physics syntax.
Specification(s): thermal_transient_physics
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fb
2.29.8The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends using the component and physics syntax to generate CSV data at time of 0.1 s for use in comparison with analytical solution.
Specification(s): thermal_transient_physics_csvdiff_0pt1sec
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fb
2.30.1The system shall be able to model conduction in a composite structure with constant surface temperatures.
Specification(s): ver-1fc
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #102
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fc
2.30.2The system shall be able to model conduction in a composite structure with constant surface temperatures to generate CSV data for use in comparisons with ABAQUS during transient at x=0.09 m.
Specification(s): ver-1fc_csvdiff_transient
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #102
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fc
2.30.3The system shall be able to model conduction in a composite structure with constant surface temperatures to generate CSV data for use in comparisons with ABAQUS during transient at t=150 s.
Specification(s): ver-1fc_csvdiff_transient_profile
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #102
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fc
2.30.4The system shall be able to model conduction in a composite structure with constant surface temperatures to generate CSV data for use in comparisons with ABAQUS and an analytical solution at steady state (t=10000 s).
Specification(s): ver-1fc_csvdiff_steady_state
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #102
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fc
2.30.5The system shall be able to generate comparison plots between the analytical solution, ABAQUS data, and simulated solution of verification case 1fc, modeling conduction in a composite structure with constant surface temperatures.
Specification(s): ver-1fc_comparison
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #102
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1fc
2.30.6The system shall be able to model conduction in a composite structure with constant surface temperatures using the Physics syntax.
Specification(s): ver-1fc-physics
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #102
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fc
2.30.7The system shall be able to model conduction in a composite structure with constant surface temperatures using the Physics syntax to generate CSV data for use in comparisons with ABAQUS during transient at t=150 s.
Specification(s): ver-1fc-physics_csvdiff_transient_profile
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #102
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fc
2.30.8The system shall be able to model conduction in a composite structure with constant surface temperatures using the Physics syntax to generate CSV data for use in comparisons with ABAQUS and an analytical solution at steady state (t=10000 s).
Specification(s): ver-1fc-physics_csvdiff_steady_state
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #102
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fc
2.31.1The system shall be able to model convective heating.
Specification(s): ver-1fd
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #103
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fd
2.31.2The system shall be able to model convective heating using the shorthand Physics syntax.
Specification(s): ver-1fd-physics
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #103
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fd
2.31.3The system shall be able to model convective heating to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1fd_csv
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #103
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fd
2.31.4The system shall be able to model convective heating using the shorthand Physics syntax to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1fd-physics_csv
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #103
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fd
2.31.5The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1fd, modeling convective heating.
Specification(s): ver-1fd_comparison
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #103
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1fd

tmap8: HeatConductionTimeDerivative
2.28.1The system shall be able to model heat conduction in a slab that has heat generation
Specification(s): ver-1fa
Design: HeatConduction HeatConductionTimeDerivative HeatSource
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fa
2.28.2The system shall be able to model heat conduction in a slab that has heat generation using the Component and Physics syntax.
Specification(s): ver-1fa-physics
Design: HeatConduction HeatConductionTimeDerivative HeatSource
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fa
2.28.3The system shall be able to model heat conduction in a slab that has heat generation to generate CSV data for use in comparisons with the analytic solution for the profile concentration.
Specification(s): ver-1fa_lineplot
Design: HeatConduction HeatConductionTimeDerivative HeatSource
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fa
2.28.4The system shall be able to model heat conduction in a slab that has heat generation using the Component and Physics syntax to generate CSV data for use in comparisons with the analytic solution for the profile concentration.
Specification(s): ver-1fa-physics_lineplot_csvdiff
Design: HeatConduction HeatConductionTimeDerivative HeatSource
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fa
2.28.5The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1fa, to model heat conduction in a slab that has heat generation.
Specification(s): ver-1fa_comparison
Design: HeatConduction HeatConductionTimeDerivative HeatSource
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1fa
2.29.1The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends
Specification(s): ver-1fb
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fb
2.29.2The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends to generate CSV data at time of 0.1 s for use in comparison with analytical solution.
Specification(s): ver-1fb_csvdiff_0pt1sec
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fb
2.29.3The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends to generate CSV data at time of 0.5 s for use in comparison with analytical solution.
Specification(s): ver-1fb_csvdiff_0pt5sec
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fb
2.29.4The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends to generate CSV data at time of 1.0 s for use in comparison with analytical solution.
Specification(s): ver-1fb_csvdiff_1pt0sec
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fb
2.29.5The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends to generate CSV data at time of 5.0 s for use in comparison with analytical solution.
Specification(s): ver-1fb_csvdiff_5pt0sec
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fb
2.29.6The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1fb, modeling thermal transient in a slab with fixed temperatures at both the ends.
Specification(s): ver-1fb_comparison
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1fb
2.29.7The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends using the component and physics syntax.
Specification(s): thermal_transient_physics
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fb
2.29.8The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends using the component and physics syntax to generate CSV data at time of 0.1 s for use in comparison with analytical solution.
Specification(s): thermal_transient_physics_csvdiff_0pt1sec
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fb
2.30.1The system shall be able to model conduction in a composite structure with constant surface temperatures.
Specification(s): ver-1fc
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #102
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fc
2.30.2The system shall be able to model conduction in a composite structure with constant surface temperatures to generate CSV data for use in comparisons with ABAQUS during transient at x=0.09 m.
Specification(s): ver-1fc_csvdiff_transient
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #102
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fc
2.30.3The system shall be able to model conduction in a composite structure with constant surface temperatures to generate CSV data for use in comparisons with ABAQUS during transient at t=150 s.
Specification(s): ver-1fc_csvdiff_transient_profile
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #102
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fc
2.30.4The system shall be able to model conduction in a composite structure with constant surface temperatures to generate CSV data for use in comparisons with ABAQUS and an analytical solution at steady state (t=10000 s).
Specification(s): ver-1fc_csvdiff_steady_state
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #102
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fc
2.30.5The system shall be able to generate comparison plots between the analytical solution, ABAQUS data, and simulated solution of verification case 1fc, modeling conduction in a composite structure with constant surface temperatures.
Specification(s): ver-1fc_comparison
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #102
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1fc
2.30.6The system shall be able to model conduction in a composite structure with constant surface temperatures using the Physics syntax.
Specification(s): ver-1fc-physics
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #102
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fc
2.30.7The system shall be able to model conduction in a composite structure with constant surface temperatures using the Physics syntax to generate CSV data for use in comparisons with ABAQUS during transient at t=150 s.
Specification(s): ver-1fc-physics_csvdiff_transient_profile
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #102
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fc
2.30.8The system shall be able to model conduction in a composite structure with constant surface temperatures using the Physics syntax to generate CSV data for use in comparisons with ABAQUS and an analytical solution at steady state (t=10000 s).
Specification(s): ver-1fc-physics_csvdiff_steady_state
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #102
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fc
2.31.1The system shall be able to model convective heating.
Specification(s): ver-1fd
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #103
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fd
2.31.2The system shall be able to model convective heating using the shorthand Physics syntax.
Specification(s): ver-1fd-physics
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #103
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fd
2.31.3The system shall be able to model convective heating to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1fd_csv
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #103
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fd
2.31.4The system shall be able to model convective heating using the shorthand Physics syntax to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1fd-physics_csv
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #103
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fd
2.31.5The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1fd, modeling convective heating.
Specification(s): ver-1fd_comparison
Design: HeatConduction HeatConductionTimeDerivative
Issue(s): #12 #103
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1fd

tmap8: HeatSource
2.28.1The system shall be able to model heat conduction in a slab that has heat generation
Specification(s): ver-1fa
Design: HeatConduction HeatConductionTimeDerivative HeatSource
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fa
2.28.2The system shall be able to model heat conduction in a slab that has heat generation using the Component and Physics syntax.
Specification(s): ver-1fa-physics
Design: HeatConduction HeatConductionTimeDerivative HeatSource
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1fa
2.28.3The system shall be able to model heat conduction in a slab that has heat generation to generate CSV data for use in comparisons with the analytic solution for the profile concentration.
Specification(s): ver-1fa_lineplot
Design: HeatConduction HeatConductionTimeDerivative HeatSource
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fa
2.28.4The system shall be able to model heat conduction in a slab that has heat generation using the Component and Physics syntax to generate CSV data for use in comparisons with the analytic solution for the profile concentration.
Specification(s): ver-1fa-physics_lineplot_csvdiff
Design: HeatConduction HeatConductionTimeDerivative HeatSource
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1fa
2.28.5The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1fa, to model heat conduction in a slab that has heat generation.
Specification(s): ver-1fa_comparison
Design: HeatConduction HeatConductionTimeDerivative HeatSource
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1fa

tmap8: MatReaction
2.34.1The system shall be able to model a convective outflow problem and calculate the pressure and concentration of the gas in the second and third enclosure and to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1ha_csv
Design: MatReaction
Issue(s): #148
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1ha
2.34.2The system shall be able to generate comparison plots between the analytical solution and simulated solution of a convective outflow problem involving three enclosures and calculate the pressure and concentration of the gas in the second and third enclosure.
Specification(s): ver-1ha_comparison
Design: MatReaction
Issue(s): #148
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1ha
2.35.1The system shall be able to model a convective outflow problem and calculate the pressure and concentration of tritium and deuterium gas in the first and second enclosure and to generate CSV data for use in comparisons with the analytic solution over time.
Specification(s): ver-1hb_csv
Design: MatReaction
Issue(s): #148 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1hb
2.35.2The system shall be able to generate comparison plots between the analytical solution and simulated solution of a convective outflow problem involving two enclosures and two different gases and calculate the pressure and concentration of the gases in the enclosures.
Specification(s): ver-1hb_comparison
Design: MatReaction
Issue(s): #148 #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1hb

tmap8: ver-1ja
2.42.1The system shall be able to model decay of tritium and associated growth of helium in a diffusion segment and generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1ja_csvdiff
Design: ver-1ja MatReaction
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1ja
2.42.2The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1ja, which models decay of tritium and associated growth of helium in a diffusion segment.
Specification(s): ver-1ja_comparison
Design: ver-1ja MatReaction
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1ja

tmap8: ver-1jb
2.43.1The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1jb_csvdiff
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.2The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps and output the profiles of concentrations.
Specification(s): ver-1jb_csvdiff_profile
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.3The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps with equivalent initial mobile and trapped tritium concentration, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1jb_csvdiff_equivalent_concentrations
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.4The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps with equivalent initial mobile and trapped tritium concentration and output the profiles of concentrations.
Specification(s): ver-1jb_csvdiff_profile_equivalent_concentrations
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.5The system shall be able to generate comparison plots between the analytical solution and simulated solution when modeling decay of tritium and associated growth of He in a diffusion segment with distributed traps.
Specification(s): ver-1jb_comparison
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1jb

tmap8: ScaledCoupledTimeDerivative
2.43.1The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1jb_csvdiff
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.2The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps and output the profiles of concentrations.
Specification(s): ver-1jb_csvdiff_profile
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.3The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps with equivalent initial mobile and trapped tritium concentration, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1jb_csvdiff_equivalent_concentrations
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.4The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with distributed traps with equivalent initial mobile and trapped tritium concentration and output the profiles of concentrations.
Specification(s): ver-1jb_csvdiff_profile_equivalent_concentrations
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1jb
2.43.5The system shall be able to generate comparison plots between the analytical solution and simulated solution when modeling decay of tritium and associated growth of He in a diffusion segment with distributed traps.
Specification(s): ver-1jb_comparison
Design: ver-1jb MatReaction MatDiffusion ScaledCoupledTimeDerivative TrappingNodalKernel ReleasingNodalKernel
Issue(s): #145 #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1jb

tmap8: BodyForce
2.48.1The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term.
Specification(s): ver-1kd_csv
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kd
2.48.2The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term with tight tolerances for higher accuracy.
Specification(s): ver-1kd_csv_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1kd
2.48.3The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term and generate an exodus file with tight tolerances for higher accuracy.
Specification(s): ver-1kd_exodus_heavy
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1kd
2.48.4The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kd, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law and a T2 volumetric source term.
Specification(s): ver-1kd_comparison
Design: ADInterfaceSorption / InterfaceSorption MatDiffusion TimeDerivative ADMatReactionFlexible BodyForce
Issue(s): #12
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1kd

tmap8: ADThermoDiffusion
2.49.1The system shall be able to model species Fickian and Soret diffusion through a semi-infinity layer.
Specification(s): ver-1l
Design: ADThermoDiffusion
Issue(s): #351
Collection(s): FUNCTIONAL
Type(s): Exodiff
Verification: ver-1l
2.49.2The system shall be able to model species Fickian and Soret diffusion through a semi-infinity layer to generate CSV data for use in comparisons with the analytic solution.
Specification(s): ver-1l_csvdiff
Design: ADThermoDiffusion
Issue(s): #351
Collection(s): FUNCTIONAL
Type(s): CSVDiff
Verification: ver-1l
2.49.3The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1l, modeling species Fickian and Soret diffusion through a semi-infinity layer.
Specification(s): ver-1l_comparison
Design: ADThermoDiffusion
Issue(s): #351
Collection(s): FUNCTIONAL
Type(s): RunCommand
Verification: ver-1l

tmap8: ADMatInterfaceReactionYHxPCT
2.50.1The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature.
Specification(s): YHx_PCT_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.2The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature and generate an exodus file.
Specification(s): YHx_PCT_exodus
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): Exodiff
2.50.3The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e3 Pa and T=1173.15 K.
Specification(s): YHx_PCT_T1173_P1e3_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.4The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=1173.15 K.
Specification(s): YHx_PCT_T1173_P1e4_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.5The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=5e4 Pa and T=1173.15 K.
Specification(s): YHx_PCT_T1173_P5e4_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.6The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=3e3 Pa and T=1273.15 K.
Specification(s): YHx_PCT_T1273_P3e3_csv
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): CSVDiff
2.50.7The system shall be able to generate comparison plots between experimental PCT curves, the model used in TMAP8, and TMAP8 predictions.
Specification(s): YHx_PCT_comparison
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONAL
Type(s): RunCommand
2.50.8The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the YHxPCT model (pressure too low).
Specification(s): YHx_PCT_error_low_pressure
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException
2.50.9The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the YHxPCT model (pressure too high).
Specification(s): YHx_PCT_error_high_pressure
Design: InterfaceDiffusion ADMatInterfaceReactionYHxPCT MatDiffusion TimeDerivative
Issue(s): #261
Collection(s): FUNCTIONALFAILURE_ANALYSIS
Type(s): RunException

References

ISO/IEC/IEEE 24765:2010(E). Systems and software engineering—Vocabulary. first edition, December 15 2010.

@manual{ISO-systems-software,
    author = "24765:2010(E), ISO/IEC/IEEE",
    title = "Systems and software engineering---Vocabulary",
    edition = "First",
    year = "2010",
    month = "December 15"
}

ASME NQA-1. ASME NQA-1-2008 with the NQA-1a-2009 addenda: Quality Assurance Requirements for Nuclear Facility Applications. first edition, August 31 2009.

@manual{ASME-NQA-1-2008,
    author = "NQA-1, ASME",
    title = "ASME NQA-1-2008 with the NQA-1a-2009 addenda: Quality Assurance Requirements for Nuclear Facility Applications",
    orginization = "American Socieity of Mechanical Engineers",
    year = "2009",
    month = "August 31",
    edition = "First"
}


[ZrCoHx_PCT_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  csvdiff = ZrCoHx_PCT_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature.'
[]


[ZrCoHx_PCT_exodus]
  type = Exodiff
  input = ZrCoHx_PCT.i
  exodiff = ZrCoHx_PCT_out.e
  prereq = ZrCoHx_PCT_csv
  should_execute = false # this test relies on the output files from ZrCoHx_PCT_csv, so it shouldn't be run twice
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature and generate an exodus file.'
[]


[ZrCoHx_PCT_T433_1E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T433_1E4P_out
                temperature=433.15
                initial_pressure_H2_enclosure_1=1e4
                initial_atomic_fraction=2.5
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T433_1E4P_out.csv
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=433.15 K.'
[]


[ZrCoHx_PCT_T433_3E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T433_3E4P_out
                temperature=433.15
                initial_pressure_H2_enclosure_1=3e4
                initial_atomic_fraction=2
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T433_3E4P_out.csv
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=3e4 Pa and T=433.15 K.'
[]


[ZrCoHx_PCT_T604_5E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T604_5E4P_out
                temperature=604.15
                initial_pressure_H2_enclosure_1=5e4
                initial_atomic_fraction=1.8
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T604_5E4P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=5e4 Pa and T=604.15 K.'
[]


[ZrCoHx_PCT_T573_1E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T573_1E4P_out
                temperature=573.15
                initial_pressure_H2_enclosure_1=1e4
                initial_atomic_fraction=1.41
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T573_1E4P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=573.15 K.'
[]


[ZrCoHx_PCT_T573_1E3P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T573_1E3P_out
                temperature=573.15
                initial_pressure_H2_enclosure_1=1e3
                initial_atomic_fraction=0.4
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T573_1E3P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e3 Pa and T=573.15 K.'
[]


[ZrCoHx_PCT_T604_1E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T604_1E4P_out
                temperature=604.15
                initial_pressure_H2_enclosure_1=1e4
                initial_atomic_fraction=0.45
                Executioner/num_steps=300'
  csvdiff = ZrCoHx_PCT_T604_1E4P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=604.15 K.'
[]


[ZrCoHx_PCT_T604_6E3P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T604_6E3P_out
                temperature=604.15
                initial_pressure_H2_enclosure_1=6e3
                initial_atomic_fraction=0.4
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T604_6E3P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=6e3 Pa and T=604.15 K.'
[]


[ZrCoHx_PCT_T433_1E2P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T433_1E2P_out
                temperature=433.15
                initial_pressure_H2_enclosure_1=1e2
                initial_atomic_fraction=0.3
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T433_1E2P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e2 Pa and T=433.15 K.'
[]


[ZrCoHx_PCT_comparison]
  type = RunCommand
  command = 'python3 comparison_ZrCoHx_PCT.py'
  requirement = 'The system shall be able to generate comparison plots between experimental PCT curves of ZrCoHx, the model used in TMAP8, and TMAP8 predictions.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[ZrCoHx_PCT_error_low_pressure]
  type = RunException
  input = ZrCoHx_PCT.i
  cli_args = 'initial_pressure_H2_enclosure_1=0.01'
  expect_err = 'In ZrCoHxPCT: pressure'
  requirement = 'The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the ZrCoHxPCT model (pressure too low).'
[]


[ZrCoHx_PCT_error_high_pressure]
  type = RunException
  input = ZrCoHx_PCT.i
  cli_args = 'initial_pressure_H2_enclosure_1=1e7'
  expect_err = 'In ZrCoHxPCT: pressure'
  requirement = 'The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the ZrCoHxPCT model (pressure too high).'
[]


[YHx_PCT_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'Executioner/nl_rel_tol=6e-6 Executioner/scheme="implicit-euler" InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_out.csv
  recover = false # see #196
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature.'
[]


[YHx_PCT_exodus]
  type = Exodiff
  input = YHx_PCT.i
  cli_args = 'Executioner/nl_rel_tol=6e-6 Executioner/scheme="implicit-euler" InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  exodiff = YHx_PCT_out.e
  prereq = YHx_PCT_csv
  should_execute = false # this test relies on the output files from YHx_PCT_csv, so it shouldn't be run twice
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature and generate an exodus file.'
[]


[YHx_PCT_T1173_P1e3_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'output_file_base=YHx_PCT_T1173_P1e3_out
                dt_init=1e1
                temperature=1173.15
                initial_pressure_H2_enclosure_1=1e3
                initial_atomic_fraction=1.55
                Executioner/num_steps=150
                Executioner/nl_rel_tol=8e-6
                Executioner/TimeStepper/growth_factor=1.1
                InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_T1173_P1e3_out.csv
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e3 Pa and T=1173.15 K.'
[]


[YHx_PCT_T1173_P1e4_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'output_file_base=YHx_PCT_T1173_P1e4_out
                temperature=1173.15
                initial_pressure_H2_enclosure_1=1e4
                initial_atomic_fraction=1.65
                Executioner/num_steps=200
                Executioner/nl_rel_tol=1e-6
                Executioner/TimeStepper/growth_factor=1.2
                InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_T1173_P1e4_out.csv
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=1173.15 K.'
[]


[YHx_PCT_T1173_P5e4_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'output_file_base=YHx_PCT_T1173_P5e4_out
                temperature=1173.15
                initial_pressure_H2_enclosure_1=5e4
                initial_atomic_fraction=1.85
                Executioner/num_steps=200
                Executioner/nl_rel_tol=5e-7
                Executioner/TimeStepper/growth_factor=1.2
                InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_T1173_P5e4_out.csv
  recover = false # see #196
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=5e4 Pa and T=1173.15 K.'
[]


[YHx_PCT_T1273_P3e3_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'output_file_base=YHx_PCT_T1273_P3e3_out
                temperature=1273.15
                initial_pressure_H2_enclosure_1=3e3
                initial_atomic_fraction=1.41
                Executioner/num_steps=200
                Executioner/nl_rel_tol=9e-6
                InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_T1273_P3e3_out.csv
  recover = false
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=3e3 Pa and T=1273.15 K.'
[]


[YHx_PCT_comparison]
  type = RunCommand
  command = 'python3 comparison_YHx_PCT.py'
  requirement = 'The system shall be able to generate comparison plots between experimental PCT curves, the model used in TMAP8, and TMAP8 predictions.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[YHx_PCT_error_low_pressure]
  type = RunException
  input = YHx_PCT.i
  cli_args = 'initial_pressure_H2_enclosure_1=0.01'
  expect_err = 'In YHxPCT: pressure'
  requirement = 'The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the YHxPCT model (pressure too low).'
[]


[YHx_PCT_error_high_pressure]
  type = RunException
  input = YHx_PCT.i
  cli_args = 'initial_pressure_H2_enclosure_1=1e7'
  expect_err = 'In YHxPCT: pressure'
  requirement = 'The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the YHxPCT model (pressure too high).'
[]


[ZrCoHx_PCT_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  csvdiff = ZrCoHx_PCT_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature.'
[]


[ZrCoHx_PCT_exodus]
  type = Exodiff
  input = ZrCoHx_PCT.i
  exodiff = ZrCoHx_PCT_out.e
  prereq = ZrCoHx_PCT_csv
  should_execute = false # this test relies on the output files from ZrCoHx_PCT_csv, so it shouldn't be run twice
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature and generate an exodus file.'
[]


[ZrCoHx_PCT_T433_1E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T433_1E4P_out
                temperature=433.15
                initial_pressure_H2_enclosure_1=1e4
                initial_atomic_fraction=2.5
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T433_1E4P_out.csv
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=433.15 K.'
[]


[ZrCoHx_PCT_T433_3E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T433_3E4P_out
                temperature=433.15
                initial_pressure_H2_enclosure_1=3e4
                initial_atomic_fraction=2
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T433_3E4P_out.csv
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=3e4 Pa and T=433.15 K.'
[]


[ZrCoHx_PCT_T604_5E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T604_5E4P_out
                temperature=604.15
                initial_pressure_H2_enclosure_1=5e4
                initial_atomic_fraction=1.8
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T604_5E4P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=5e4 Pa and T=604.15 K.'
[]


[ZrCoHx_PCT_T573_1E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T573_1E4P_out
                temperature=573.15
                initial_pressure_H2_enclosure_1=1e4
                initial_atomic_fraction=1.41
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T573_1E4P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=573.15 K.'
[]


[ZrCoHx_PCT_T573_1E3P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T573_1E3P_out
                temperature=573.15
                initial_pressure_H2_enclosure_1=1e3
                initial_atomic_fraction=0.4
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T573_1E3P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e3 Pa and T=573.15 K.'
[]


[ZrCoHx_PCT_T604_1E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T604_1E4P_out
                temperature=604.15
                initial_pressure_H2_enclosure_1=1e4
                initial_atomic_fraction=0.45
                Executioner/num_steps=300'
  csvdiff = ZrCoHx_PCT_T604_1E4P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=604.15 K.'
[]


[ZrCoHx_PCT_T604_6E3P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T604_6E3P_out
                temperature=604.15
                initial_pressure_H2_enclosure_1=6e3
                initial_atomic_fraction=0.4
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T604_6E3P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=6e3 Pa and T=604.15 K.'
[]


[ZrCoHx_PCT_T433_1E2P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T433_1E2P_out
                temperature=433.15
                initial_pressure_H2_enclosure_1=1e2
                initial_atomic_fraction=0.3
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T433_1E2P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e2 Pa and T=433.15 K.'
[]


[ZrCoHx_PCT_comparison]
  type = RunCommand
  command = 'python3 comparison_ZrCoHx_PCT.py'
  requirement = 'The system shall be able to generate comparison plots between experimental PCT curves of ZrCoHx, the model used in TMAP8, and TMAP8 predictions.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[ZrCoHx_PCT_error_low_pressure]
  type = RunException
  input = ZrCoHx_PCT.i
  cli_args = 'initial_pressure_H2_enclosure_1=0.01'
  expect_err = 'In ZrCoHxPCT: pressure'
  requirement = 'The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the ZrCoHxPCT model (pressure too low).'
[]


[ZrCoHx_PCT_error_high_pressure]
  type = RunException
  input = ZrCoHx_PCT.i
  cli_args = 'initial_pressure_H2_enclosure_1=1e7'
  expect_err = 'In ZrCoHxPCT: pressure'
  requirement = 'The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the ZrCoHxPCT model (pressure too high).'
[]


[ZrCoHx_PCT_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  csvdiff = ZrCoHx_PCT_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature.'
[]


[ZrCoHx_PCT_exodus]
  type = Exodiff
  input = ZrCoHx_PCT.i
  exodiff = ZrCoHx_PCT_out.e
  prereq = ZrCoHx_PCT_csv
  should_execute = false # this test relies on the output files from ZrCoHx_PCT_csv, so it shouldn't be run twice
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature and generate an exodus file.'
[]


[ZrCoHx_PCT_T433_1E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T433_1E4P_out
                temperature=433.15
                initial_pressure_H2_enclosure_1=1e4
                initial_atomic_fraction=2.5
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T433_1E4P_out.csv
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=433.15 K.'
[]


[ZrCoHx_PCT_T433_3E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T433_3E4P_out
                temperature=433.15
                initial_pressure_H2_enclosure_1=3e4
                initial_atomic_fraction=2
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T433_3E4P_out.csv
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=3e4 Pa and T=433.15 K.'
[]


[ZrCoHx_PCT_T604_5E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T604_5E4P_out
                temperature=604.15
                initial_pressure_H2_enclosure_1=5e4
                initial_atomic_fraction=1.8
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T604_5E4P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=5e4 Pa and T=604.15 K.'
[]


[ZrCoHx_PCT_T573_1E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T573_1E4P_out
                temperature=573.15
                initial_pressure_H2_enclosure_1=1e4
                initial_atomic_fraction=1.41
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T573_1E4P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=573.15 K.'
[]


[ZrCoHx_PCT_T573_1E3P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T573_1E3P_out
                temperature=573.15
                initial_pressure_H2_enclosure_1=1e3
                initial_atomic_fraction=0.4
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T573_1E3P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e3 Pa and T=573.15 K.'
[]


[ZrCoHx_PCT_T604_1E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T604_1E4P_out
                temperature=604.15
                initial_pressure_H2_enclosure_1=1e4
                initial_atomic_fraction=0.45
                Executioner/num_steps=300'
  csvdiff = ZrCoHx_PCT_T604_1E4P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=604.15 K.'
[]


[ZrCoHx_PCT_T604_6E3P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T604_6E3P_out
                temperature=604.15
                initial_pressure_H2_enclosure_1=6e3
                initial_atomic_fraction=0.4
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T604_6E3P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=6e3 Pa and T=604.15 K.'
[]


[ZrCoHx_PCT_T433_1E2P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T433_1E2P_out
                temperature=433.15
                initial_pressure_H2_enclosure_1=1e2
                initial_atomic_fraction=0.3
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T433_1E2P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e2 Pa and T=433.15 K.'
[]


[ZrCoHx_PCT_comparison]
  type = RunCommand
  command = 'python3 comparison_ZrCoHx_PCT.py'
  requirement = 'The system shall be able to generate comparison plots between experimental PCT curves of ZrCoHx, the model used in TMAP8, and TMAP8 predictions.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[ZrCoHx_PCT_error_low_pressure]
  type = RunException
  input = ZrCoHx_PCT.i
  cli_args = 'initial_pressure_H2_enclosure_1=0.01'
  expect_err = 'In ZrCoHxPCT: pressure'
  requirement = 'The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the ZrCoHxPCT model (pressure too low).'
[]


[ZrCoHx_PCT_error_high_pressure]
  type = RunException
  input = ZrCoHx_PCT.i
  cli_args = 'initial_pressure_H2_enclosure_1=1e7'
  expect_err = 'In ZrCoHxPCT: pressure'
  requirement = 'The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the ZrCoHxPCT model (pressure too high).'
[]


[ver-1jb_csvdiff]
  type = CSVDiff
  input = ver-1jb.i
  csvdiff = ver-1jb_time_dependent_out.csv
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps, with the fine mesh and timestep required to match the analytical solution to generate CSV
                   data for use in comparisons with the analytic solution.'
[]


[ver-1jb_csvdiff_profile]
  type = CSVDiff
  input = ver-1jb.i
  csvdiff = ver-1jb_profile_out_line_0048.csv
  should_execute = false # uses ver-1jb_csvdiff
  prereq = ver-1jb_csvdiff
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps and output the profiles of concentrations.'
[]


[ver-1jb_csvdiff_equivalent_concentrations]
  type = CSVDiff
  input = ver-1jb.i
  cli_args = 'tritium_mobile_concentration_initial=1e25
                trap_per_free=1
                Outputs/file_base=ver-1jb_equivalent_concentrations_out
                Outputs/time_dependent_out/file_base=ver-1jb_equivalent_concentrations_time_dependent_out
                Outputs/profile_out/file_base=ver-1jb_equivalent_concentrations_profile_out'
  csvdiff = ver-1jb_equivalent_concentrations_time_dependent_out.csv
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps with equivalent initial mobile and trapped tritium concentration,
                   with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in
                   comparisons with the analytic solution.'
[]


[ver-1jb_csvdiff_profile_equivalent_concentrations]
  type = CSVDiff
  input = ver-1jb.i
  cli_args = 'tritium_mobile_concentration_initial=1e25
                trap_per_free=1
                Outputs/file_base=ver-1jb_equivalent_concentrations_out
                Outputs/time_dependent_out/file_base=ver-1jb_equivalent_concentrations_time_dependent_out
                Outputs/profile_out/file_base=ver-1jb_equivalent_concentrations_profile_out'
  csvdiff = ver-1jb_equivalent_concentrations_profile_out_line_0048.csv
  should_execute = false # uses ver-1jb_csvdiff_equivalent_concentrations
  prereq = ver-1jb_csvdiff_equivalent_concentrations
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps with equivalent initial mobile and trapped tritium concentration and output the
                   profiles of concentrations.'
[]


[ver-1jb_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1jb.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution
                   when modeling decay of tritium and associated growth of He in a diffusion segment with distributed traps.'
  required_python_packages = 'csv matplotlib numpy pandas os'
[]


[ver-1kb_csv_without_concentration_jump]
  type = CSVDiff
  input = ver-1kb.i
  csvdiff = ver-1kb_out_k1.csv
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law without any concentration jump at the interface.'
[]


[ver-1kb_csv_concentration_jump]
  type = CSVDiff
  input = ver-1kb.i
  cli_args = "solubility='${fparse 10/(R*temperature)}'
                Outputs/file_base=ver-1kb_out_k10"
  csvdiff = ver-1kb_out_k10.csv
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law with a concentration jump at the interface.'
[]


[ver-1kb_exodus_concentration_jump]
  type = Exodiff
  input = ver-1kb.i
  exodiff = ver-1kb_out_k10.e
  cli_args = "solubility='${fparse 10/(R*temperature)}'
                Outputs/file_base=ver-1kb_out_k10"
  prereq = ver-1kb_csv_concentration_jump
  should_execute = false # this test relies on the output files from ver-1kb_csv_concentration_jump, so it shouldn't be run twice
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law with a concentration jump at the interface to generate csv for use in comparisons with the analytic solution.'
[]


[ver-1kb_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1kb.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kb, modeling a diffusion across a membrane separating two enclosures in accordance with Henry’s law.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[ver-1kc-1_csv]
  type = CSVDiff
  input = ver-1kc-1.i
  cli_args = "nb_segments_TMAP8=1e1
                simulation_time=4
                Executioner/nl_abs_tol=1e-5
                Executioner/nl_rel_tol=1e-4
                Outputs/exodus=false
                Outputs/file_base=ver-1kc-1_out_k10_light"
  csvdiff = ver-1kc-1_out_k10_light.csv
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface.'
[]


[ver-1kc-1_csv_heavy]
  type = CSVDiff
  heavy = true
  input = ver-1kc-1.i
  csvdiff = ver-1kc-1_out_k10.csv
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with a fine mesh and tight tolerances for higher accuracy.'
[]


[ver-1kc-1_exodus_heavy]
  type = Exodiff
  heavy = true
  input = ver-1kc-1.i
  exodiff = ver-1kc-1_out_k10.e
  prereq = ver-1kc-1_csv_heavy
  should_execute = false # this test relies on the output files from ver-1kc-1_csv_concentration_jump, so it shouldn't be run twice
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with a fine mesh and tight tolerances for higher accuracy and generate an exodus file.'
[]


[ver-1kc-1_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1kc-1.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kc-1, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[ver-1kc-2_csv]
  type = CSVDiff
  input = ver-1kc-2.i
  cli_args = "simulation_time=0.05
                Executioner/nl_rel_tol=1e-6
                Outputs/file_base=ver-1kc-2_out_k10_light"
  csvdiff = ver-1kc-2_out_k10_light.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface.'
[]


[ver-1kc-2_csv_heavy]
  type = CSVDiff
  heavy = true
  input = ver-1kc-2.i
  csvdiff = ver-1kc-2_out_k10.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with tight tolerances for higher accuracy.'
[]


[ver-1kc-2_exodus_heavy]
  type = Exodiff
  heavy = true
  input = ver-1kc-2.i
  exodiff = ver-1kc-2_out_k10.e
  prereq = ver-1kc-2_csv_heavy
  should_execute = false # this test relies on the output files from ver-1kc-2_csv_heavy, so it shouldn't be run twice
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and generate an exodus file with tight tolerances for higher accuracy.'
[]


[ver-1kc-2_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1kc-2.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kc-2, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[ver-1kd_csv]
  type = CSVDiff
  input = ver-1kd.i
  cli_args = "simulation_time=0.05
                Executioner/nl_rel_tol=1e-6
                Outputs/exodus=false
                Outputs/file_base=ver-1kd_out_k10_light"
  csvdiff = ver-1kd_out_k10_light.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term.'
[]


[ver-1kd_csv_heavy]
  type = CSVDiff
  heavy = true
  input = ver-1kd.i
  csvdiff = ver-1kd_out_k10.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term with tight tolerances for higher accuracy.'
[]


[ver-1kd_exodus_heavy]
  type = Exodiff
  heavy = true
  input = ver-1kd.i
  exodiff = ver-1kd_out_k10.e
  prereq = ver-1kd_csv_heavy
  should_execute = false # this test relies on the output files from ver-1kd_csv_heavy, so it shouldn't be run twice
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term and generate an exodus file with tight tolerances for higher accuracy.'
[]


[ver-1kd_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1kd.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kd, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law  and a T2 volumetric source term.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[YHx_PCT_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'Executioner/nl_rel_tol=6e-6 Executioner/scheme="implicit-euler" InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_out.csv
  recover = false # see #196
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature.'
[]


[YHx_PCT_exodus]
  type = Exodiff
  input = YHx_PCT.i
  cli_args = 'Executioner/nl_rel_tol=6e-6 Executioner/scheme="implicit-euler" InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  exodiff = YHx_PCT_out.e
  prereq = YHx_PCT_csv
  should_execute = false # this test relies on the output files from YHx_PCT_csv, so it shouldn't be run twice
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature and generate an exodus file.'
[]


[YHx_PCT_T1173_P1e3_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'output_file_base=YHx_PCT_T1173_P1e3_out
                dt_init=1e1
                temperature=1173.15
                initial_pressure_H2_enclosure_1=1e3
                initial_atomic_fraction=1.55
                Executioner/num_steps=150
                Executioner/nl_rel_tol=8e-6
                Executioner/TimeStepper/growth_factor=1.1
                InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_T1173_P1e3_out.csv
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e3 Pa and T=1173.15 K.'
[]


[YHx_PCT_T1173_P1e4_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'output_file_base=YHx_PCT_T1173_P1e4_out
                temperature=1173.15
                initial_pressure_H2_enclosure_1=1e4
                initial_atomic_fraction=1.65
                Executioner/num_steps=200
                Executioner/nl_rel_tol=1e-6
                Executioner/TimeStepper/growth_factor=1.2
                InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_T1173_P1e4_out.csv
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=1173.15 K.'
[]


[YHx_PCT_T1173_P5e4_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'output_file_base=YHx_PCT_T1173_P5e4_out
                temperature=1173.15
                initial_pressure_H2_enclosure_1=5e4
                initial_atomic_fraction=1.85
                Executioner/num_steps=200
                Executioner/nl_rel_tol=5e-7
                Executioner/TimeStepper/growth_factor=1.2
                InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_T1173_P5e4_out.csv
  recover = false # see #196
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=5e4 Pa and T=1173.15 K.'
[]


[YHx_PCT_T1273_P3e3_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'output_file_base=YHx_PCT_T1273_P3e3_out
                temperature=1273.15
                initial_pressure_H2_enclosure_1=3e3
                initial_atomic_fraction=1.41
                Executioner/num_steps=200
                Executioner/nl_rel_tol=9e-6
                InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_T1273_P3e3_out.csv
  recover = false
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=3e3 Pa and T=1273.15 K.'
[]


[YHx_PCT_comparison]
  type = RunCommand
  command = 'python3 comparison_YHx_PCT.py'
  requirement = 'The system shall be able to generate comparison plots between experimental PCT curves, the model used in TMAP8, and TMAP8 predictions.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[YHx_PCT_error_low_pressure]
  type = RunException
  input = YHx_PCT.i
  cli_args = 'initial_pressure_H2_enclosure_1=0.01'
  expect_err = 'In YHxPCT: pressure'
  requirement = 'The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the YHxPCT model (pressure too low).'
[]


[YHx_PCT_error_high_pressure]
  type = RunException
  input = YHx_PCT.i
  cli_args = 'initial_pressure_H2_enclosure_1=1e7'
  expect_err = 'In YHxPCT: pressure'
  requirement = 'The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the YHxPCT model (pressure too high).'
[]


[ZrCoHx_PCT_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  csvdiff = ZrCoHx_PCT_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature.'
[]


[ZrCoHx_PCT_exodus]
  type = Exodiff
  input = ZrCoHx_PCT.i
  exodiff = ZrCoHx_PCT_out.e
  prereq = ZrCoHx_PCT_csv
  should_execute = false # this test relies on the output files from ZrCoHx_PCT_csv, so it shouldn't be run twice
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature and generate an exodus file.'
[]


[ZrCoHx_PCT_T433_1E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T433_1E4P_out
                temperature=433.15
                initial_pressure_H2_enclosure_1=1e4
                initial_atomic_fraction=2.5
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T433_1E4P_out.csv
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=433.15 K.'
[]


[ZrCoHx_PCT_T433_3E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T433_3E4P_out
                temperature=433.15
                initial_pressure_H2_enclosure_1=3e4
                initial_atomic_fraction=2
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T433_3E4P_out.csv
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=3e4 Pa and T=433.15 K.'
[]


[ZrCoHx_PCT_T604_5E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T604_5E4P_out
                temperature=604.15
                initial_pressure_H2_enclosure_1=5e4
                initial_atomic_fraction=1.8
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T604_5E4P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=5e4 Pa and T=604.15 K.'
[]


[ZrCoHx_PCT_T573_1E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T573_1E4P_out
                temperature=573.15
                initial_pressure_H2_enclosure_1=1e4
                initial_atomic_fraction=1.41
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T573_1E4P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=573.15 K.'
[]


[ZrCoHx_PCT_T573_1E3P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T573_1E3P_out
                temperature=573.15
                initial_pressure_H2_enclosure_1=1e3
                initial_atomic_fraction=0.4
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T573_1E3P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e3 Pa and T=573.15 K.'
[]


[ZrCoHx_PCT_T604_1E4P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T604_1E4P_out
                temperature=604.15
                initial_pressure_H2_enclosure_1=1e4
                initial_atomic_fraction=0.45
                Executioner/num_steps=300'
  csvdiff = ZrCoHx_PCT_T604_1E4P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=604.15 K.'
[]


[ZrCoHx_PCT_T604_6E3P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T604_6E3P_out
                temperature=604.15
                initial_pressure_H2_enclosure_1=6e3
                initial_atomic_fraction=0.4
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T604_6E3P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=6e3 Pa and T=604.15 K.'
[]


[ZrCoHx_PCT_T433_1E2P_csv]
  type = CSVDiff
  input = ZrCoHx_PCT.i
  cli_args = 'output_file_base=ZrCoHx_PCT_T433_1E2P_out
                temperature=433.15
                initial_pressure_H2_enclosure_1=1e2
                initial_atomic_fraction=0.3
                Executioner/num_steps=200'
  csvdiff = ZrCoHx_PCT_T433_1E2P_out.csv
  max_parallel = 1 # see #200
  requirement = 'The system shall be able to model the PCT curves of ZrCoHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e2 Pa and T=433.15 K.'
[]


[ZrCoHx_PCT_comparison]
  type = RunCommand
  command = 'python3 comparison_ZrCoHx_PCT.py'
  requirement = 'The system shall be able to generate comparison plots between experimental PCT curves of ZrCoHx, the model used in TMAP8, and TMAP8 predictions.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[ZrCoHx_PCT_error_low_pressure]
  type = RunException
  input = ZrCoHx_PCT.i
  cli_args = 'initial_pressure_H2_enclosure_1=0.01'
  expect_err = 'In ZrCoHxPCT: pressure'
  requirement = 'The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the ZrCoHxPCT model (pressure too low).'
[]


[ZrCoHx_PCT_error_high_pressure]
  type = RunException
  input = ZrCoHx_PCT.i
  cli_args = 'initial_pressure_H2_enclosure_1=1e7'
  expect_err = 'In ZrCoHxPCT: pressure'
  requirement = 'The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the ZrCoHxPCT model (pressure too high).'
[]


[ver-1b]
  type = Exodiff
  input = ver-1b.i
  exodiff = ver-1b_test_out.e
  cli_args = 'Executioner/dt=10 node_num=100 Outputs/exodus/file_base=ver-1b_test_out Outputs/csv/file_base=ver-1b_test_out'
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source.'
[]


[ver-1b_csvdiff]
  type = CSVDiff
  input = ver-1b.i
  should_execute = False
  csvdiff = ver-1b_test_out.csv
  cli_args = 'Executioner/dt=10 node_num=100 Outputs/exodus/file_base=ver-1b_test_out Outputs/csv/file_base=ver-1b_test_out'
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source to generate CSV data for use in comparisons with the analytic solution over time.'
  prereq = ver-1b
[]


[ver-1b-components]
  type = Exodiff
  input = ver-1b-component.i
  exodiff = ver-1b-component_out.e
  cli_args = 'Executioner/dt=10 node_num=100 Outputs/exodus/file_base=ver-1b-component_out Outputs/csv/file_base=ver-1b-component_out'
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source using a Physics and Components syntax.'
[]


[ver-1b-components_csvdiff]
  type = CSVDiff
  input = ver-1b-component.i
  should_execute = False
  csvdiff = ver-1b-component_out.csv
  cli_args = 'Executioner/dt=10 node_num=100 Outputs/exodus/file_base=ver-1b-component_out Outputs/csv/file_base=ver-1b-component_out'
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source using a Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution over time.'
  prereq = ver-1b-components
[]


[ver-1b_heavy]
  type = Exodiff
  input = ver-1b.i
  exodiff = ver-1b_out.e
  heavy = true
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source with the fine mesh and time step required to match the analytical solution.'
[]


[ver-1b_heavy_csvdiff]
  type = CSVDiff
  input = ver-1b.i
  should_execute = False # this test relies on the output files from ver-1b_heavy, so it shouldn't be run twice
  csvdiff = ver-1b_csv.csv
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time.'
  heavy = true
  prereq = ver-1b_heavy
[]


[ver-1b_heavy_lineplot]
  type = CSVDiff
  input = ver-1b.i
  should_execute = False # this test relies on the output files from ver-1b_heavy, so it shouldn't be run twice
  csvdiff = ver-1b_vector_postproc_line_0250.csv
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration.'
  heavy = true
  prereq = ver-1b_heavy
[]


[ver-1b_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1b.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1b, modeling transient diffusion through a slab with a constant concentration boundary condition as the species source.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1c_TMAP4]
  type = Exodiff
  input = 'ver-1c.i'
  exodiff = ver-1c_tmap4.e
  cli_args = 'BCs/lhs/type=NeumannBC Outputs/file_base=ver-1c_tmap4'
  requirement = 'The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion with boundary conditions consistent with TMAP4.'
[]


[ver-1c_TMAP7]
  type = Exodiff
  input = 'ver-1c.i'
  exodiff = ver-1c_tmap7.e
  cli_args = 'BCs/lhs/type=DirichletBC Outputs/file_base=ver-1c_tmap7'
  requirement = 'The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion with boundary conditions consistent with TMAP7'
[]


[ver-1c-components]
  type = Exodiff
  input = 'ver-1c-component.i'
  exodiff = ver-1c-component_out.e
  requirement = 'The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion, using a Physics and Components syntax.'
  # Different preconditioning
  abs_zero = 1e-8
  capabilities = 'method=opt'
[]


[ver-1c_TMAP4_csvdiff]
  type = CSVDiff
  input = ver-1c.i
  should_execute = False # this test relies on the output files from ver-1c_TMAP4, so it shouldn't be run twice
  csvdiff = ver-1c_tmap4.csv
  requirement = 'The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion to generate CSV data for use in comparisons with the analytic solution over time for the TMAP4 verification case.'
  prereq = ver-1c_TMAP4
[]


[ver-1c_TMAP7_csvdiff]
  type = CSVDiff
  input = ver-1c.i
  should_execute = False # this test relies on the output files from ver-1c_TMAP7, so it shouldn't be run twice
  csvdiff = ver-1c_tmap7.csv
  requirement = 'The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion to generate CSV data for use in comparisons with the analytic solution over time for the TMAP7 verification case.'
  prereq = ver-1c_TMAP7
[]


[ver-1c-components_csvdiff]
  type = CSVDiff
  input = 'ver-1c-component.i'
  should_execute = False # this test relies on the output files from ver-1c-components, so it shouldn't be run twice
  csvdiff = ver-1c-component_csv.csv
  requirement = 'The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion using a Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution over time for the TMAP7 verification case.'
  prereq = ver-1c-components
[]


[ver-1c_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1c.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1c, modeling species permeation into an unloaded portion of a slab from a pre-loaded portion for both the TMAP4 and TMAP7 verification cases.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1e]
  type = Exodiff
  input = ver-1e.i
  exodiff = ver-1e_test_exodus.e
  cli_args = 'Executioner/dt=0.2 Executioner/end_time=50 Outputs/exodus/file_base=ver-1e_test_exodus Outputs/csv/file_base=ver-1e_test_exodus'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source.'
  exodiff_opts = '-match_ids'
  map = False
[]


[ver-1e_csvdiff]
  type = CSVDiff
  input = ver-1e.i
  should_execute = False
  csvdiff = ver-1e_test_exodus.csv
  cli_args = 'Executioner/dt=0.2 Executioner/end_time=50 Outputs/exodus/file_base=ver-1e_test_exodus Outputs/csv/file_base=ver-1e_test_exodus'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1e
[]


[ver-1e-component]
  type = Exodiff
  input = ver-1e-component.i
  exodiff = ver-1e-component_test_exodus.e
  cli_args = 'Executioner/dt=0.2 Executioner/end_time=50 Outputs/exodus/file_base=ver-1e-component_test_exodus Outputs/csv/file_base=ver-1e-component_test_exodus'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, using the shorthand Physics and Components syntax.'
  # Very small dimensions
  exodiff_opts = '-match_ids'
  map = False
[]


[ver-1e-component_csvdiff]
  type = CSVDiff
  input = ver-1e-component.i
  should_execute = False
  csvdiff = ver-1e-component_test_exodus.csv
  cli_args = 'Executioner/dt=0.2 Executioner/end_time=50 Outputs/exodus/file_base=ver-1e-component_test_exodus Outputs/csv/file_base=ver-1e-component_test_exodus'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, using the shorthand Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1e-component
[]


[ver-1e_TMAP4_heavy]
  type = Exodiff
  input = ver-1e.i
  exodiff = TMAP4.e
  heavy = true
  cli_args = 'T_SiC=63e-6 D_ver=8e-6 Outputs/exodus/file_base=TMAP4 Outputs/csv/file_base=TMAP4 Outputs/vector_postproc/file_base=TMAP4_vector_postproc'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution for the TMAP4 verification case.'
  exodiff_opts = '-match_ids'
  map = False
[]


[ver-1e_TMAP7_heavy]
  type = Exodiff
  input = ver-1e.i
  exodiff = TMAP7.e
  heavy = true
  cli_args = 'T_SiC=66e-6 D_ver=15.75e-6 Outputs/exodus/file_base=TMAP7 Outputs/csv/file_base=TMAP7 Outputs/vector_postproc/file_base=TMAP7_vector_postproc'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution for the TMAP7 verification case.'
  exodiff_opts = '-match_ids'
  map = False
[]


[ver-1e_TMAP4_heavy_csvdiff]
  type = CSVDiff
  input = ver-1e.i
  should_execute = False # this test relies on the output files from ver-1e_TMAP4_heavy, so it shouldn't be run twice
  csvdiff = TMAP4.csv
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time for the TMAP4 verification case.'
  heavy = true
  prereq = ver-1e_TMAP4_heavy
[]


[ver-1e_TMAP7_heavy_csvdiff]
  type = CSVDiff
  input = ver-1e.i
  should_execute = False # this test relies on the output files from ver-1e_TMAP7_heavy, so it shouldn't be run twice
  csvdiff = TMAP7.csv
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time for the TMAP7 verification case.'
  heavy = true
  prereq = ver-1e_TMAP7_heavy
[]


[ver-1e_TMAP4_heavy_lineplot]
  type = CSVDiff
  input = ver-1e.i
  should_execute = False # this test relies on the output files from ver-1e_TMAP4_heavy, so it shouldn't be run twice
  csvdiff = TMAP4_vector_postproc_line_0548.csv
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration for the TMAP4 verification case.'
  heavy = true
  prereq = ver-1e_TMAP4_heavy
[]


[ver-1e_TMAP7_heavy_lineplot]
  type = CSVDiff
  input = ver-1e.i
  should_execute = False # this test relies on the output files from ver-1e_TMAP7_heavy, so it shouldn't be run twice
  csvdiff = TMAP7_vector_postproc_line_0548.csv
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration for the TMAP7 verification case.'
  heavy = true
  prereq = ver-1e_TMAP7_heavy
[]


[ver-1e_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1e.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1e, modeling transient diffusion through a composite slab with a constant concentration boundary condition as the species source for both the TMAP4 and TMAP7 verification cases.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1kb_csv_without_concentration_jump]
  type = CSVDiff
  input = ver-1kb.i
  csvdiff = ver-1kb_out_k1.csv
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law without any concentration jump at the interface.'
[]


[ver-1kb_csv_concentration_jump]
  type = CSVDiff
  input = ver-1kb.i
  cli_args = "solubility='${fparse 10/(R*temperature)}'
                Outputs/file_base=ver-1kb_out_k10"
  csvdiff = ver-1kb_out_k10.csv
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law with a concentration jump at the interface.'
[]


[ver-1kb_exodus_concentration_jump]
  type = Exodiff
  input = ver-1kb.i
  exodiff = ver-1kb_out_k10.e
  cli_args = "solubility='${fparse 10/(R*temperature)}'
                Outputs/file_base=ver-1kb_out_k10"
  prereq = ver-1kb_csv_concentration_jump
  should_execute = false # this test relies on the output files from ver-1kb_csv_concentration_jump, so it shouldn't be run twice
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law with a concentration jump at the interface to generate csv for use in comparisons with the analytic solution.'
[]


[ver-1kb_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1kb.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kb, modeling a diffusion across a membrane separating two enclosures in accordance with Henry’s law.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[ver-1kc-1_csv]
  type = CSVDiff
  input = ver-1kc-1.i
  cli_args = "nb_segments_TMAP8=1e1
                simulation_time=4
                Executioner/nl_abs_tol=1e-5
                Executioner/nl_rel_tol=1e-4
                Outputs/exodus=false
                Outputs/file_base=ver-1kc-1_out_k10_light"
  csvdiff = ver-1kc-1_out_k10_light.csv
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface.'
[]


[ver-1kc-1_csv_heavy]
  type = CSVDiff
  heavy = true
  input = ver-1kc-1.i
  csvdiff = ver-1kc-1_out_k10.csv
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with a fine mesh and tight tolerances for higher accuracy.'
[]


[ver-1kc-1_exodus_heavy]
  type = Exodiff
  heavy = true
  input = ver-1kc-1.i
  exodiff = ver-1kc-1_out_k10.e
  prereq = ver-1kc-1_csv_heavy
  should_execute = false # this test relies on the output files from ver-1kc-1_csv_concentration_jump, so it shouldn't be run twice
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with a fine mesh and tight tolerances for higher accuracy and generate an exodus file.'
[]


[ver-1kc-1_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1kc-1.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kc-1, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[ver-1kc-2_csv]
  type = CSVDiff
  input = ver-1kc-2.i
  cli_args = "simulation_time=0.05
                Executioner/nl_rel_tol=1e-6
                Outputs/file_base=ver-1kc-2_out_k10_light"
  csvdiff = ver-1kc-2_out_k10_light.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface.'
[]


[ver-1kc-2_csv_heavy]
  type = CSVDiff
  heavy = true
  input = ver-1kc-2.i
  csvdiff = ver-1kc-2_out_k10.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with tight tolerances for higher accuracy.'
[]


[ver-1kc-2_exodus_heavy]
  type = Exodiff
  heavy = true
  input = ver-1kc-2.i
  exodiff = ver-1kc-2_out_k10.e
  prereq = ver-1kc-2_csv_heavy
  should_execute = false # this test relies on the output files from ver-1kc-2_csv_heavy, so it shouldn't be run twice
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and generate an exodus file with tight tolerances for higher accuracy.'
[]


[ver-1kc-2_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1kc-2.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kc-2, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[ver-1kd_csv]
  type = CSVDiff
  input = ver-1kd.i
  cli_args = "simulation_time=0.05
                Executioner/nl_rel_tol=1e-6
                Outputs/exodus=false
                Outputs/file_base=ver-1kd_out_k10_light"
  csvdiff = ver-1kd_out_k10_light.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term.'
[]


[ver-1kd_csv_heavy]
  type = CSVDiff
  heavy = true
  input = ver-1kd.i
  csvdiff = ver-1kd_out_k10.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term with tight tolerances for higher accuracy.'
[]


[ver-1kd_exodus_heavy]
  type = Exodiff
  heavy = true
  input = ver-1kd.i
  exodiff = ver-1kd_out_k10.e
  prereq = ver-1kd_csv_heavy
  should_execute = false # this test relies on the output files from ver-1kd_csv_heavy, so it shouldn't be run twice
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term and generate an exodus file with tight tolerances for higher accuracy.'
[]


[ver-1kd_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1kd.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kd, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law  and a T2 volumetric source term.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[YHx_PCT_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'Executioner/nl_rel_tol=6e-6 Executioner/scheme="implicit-euler" InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_out.csv
  recover = false # see #196
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature.'
[]


[YHx_PCT_exodus]
  type = Exodiff
  input = YHx_PCT.i
  cli_args = 'Executioner/nl_rel_tol=6e-6 Executioner/scheme="implicit-euler" InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  exodiff = YHx_PCT_out.e
  prereq = YHx_PCT_csv
  should_execute = false # this test relies on the output files from YHx_PCT_csv, so it shouldn't be run twice
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature and generate an exodus file.'
[]


[YHx_PCT_T1173_P1e3_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'output_file_base=YHx_PCT_T1173_P1e3_out
                dt_init=1e1
                temperature=1173.15
                initial_pressure_H2_enclosure_1=1e3
                initial_atomic_fraction=1.55
                Executioner/num_steps=150
                Executioner/nl_rel_tol=8e-6
                Executioner/TimeStepper/growth_factor=1.1
                InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_T1173_P1e3_out.csv
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e3 Pa and T=1173.15 K.'
[]


[YHx_PCT_T1173_P1e4_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'output_file_base=YHx_PCT_T1173_P1e4_out
                temperature=1173.15
                initial_pressure_H2_enclosure_1=1e4
                initial_atomic_fraction=1.65
                Executioner/num_steps=200
                Executioner/nl_rel_tol=1e-6
                Executioner/TimeStepper/growth_factor=1.2
                InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_T1173_P1e4_out.csv
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=1173.15 K.'
[]


[YHx_PCT_T1173_P5e4_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'output_file_base=YHx_PCT_T1173_P5e4_out
                temperature=1173.15
                initial_pressure_H2_enclosure_1=5e4
                initial_atomic_fraction=1.85
                Executioner/num_steps=200
                Executioner/nl_rel_tol=5e-7
                Executioner/TimeStepper/growth_factor=1.2
                InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_T1173_P5e4_out.csv
  recover = false # see #196
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=5e4 Pa and T=1173.15 K.'
[]


[YHx_PCT_T1273_P3e3_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'output_file_base=YHx_PCT_T1273_P3e3_out
                temperature=1273.15
                initial_pressure_H2_enclosure_1=3e3
                initial_atomic_fraction=1.41
                Executioner/num_steps=200
                Executioner/nl_rel_tol=9e-6
                InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_T1273_P3e3_out.csv
  recover = false
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=3e3 Pa and T=1273.15 K.'
[]


[YHx_PCT_comparison]
  type = RunCommand
  command = 'python3 comparison_YHx_PCT.py'
  requirement = 'The system shall be able to generate comparison plots between experimental PCT curves, the model used in TMAP8, and TMAP8 predictions.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[YHx_PCT_error_low_pressure]
  type = RunException
  input = YHx_PCT.i
  cli_args = 'initial_pressure_H2_enclosure_1=0.01'
  expect_err = 'In YHxPCT: pressure'
  requirement = 'The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the YHxPCT model (pressure too low).'
[]


[YHx_PCT_error_high_pressure]
  type = RunException
  input = YHx_PCT.i
  cli_args = 'initial_pressure_H2_enclosure_1=1e7'
  expect_err = 'In YHxPCT: pressure'
  requirement = 'The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the YHxPCT model (pressure too high).'
[]


[species_initial_p]
  type = RunException
  input = enclosure0D.i
  cli_args = "ActionComponents/enc/species_initial_pressures='1 2'"
  detail = "the number of species does not match the number of species initial pressures,"
  expect_err = "The number of species partial pressures must match the number of species."
[]


[species_scaling_factors]
  type = RunException
  input = enclosure0D.i
  cli_args = "ActionComponents/enc/species_scaling_factors='1 2'"
  detail = "the number of species does not match the number of scaling factors for the species equations,"
  expect_err = "The number of species scaling factors must match the number of species."
[]


[species_equilibrium]
  type = RunException
  input = enclosure0D.i
  cli_args = "ActionComponents/enc/equilibrium_constants='1 2'"
  detail = "the number of species does not match the number of equilibrium constants."
  expect_err = "The number of equilibrium constants must match the number of species"
[]


[no_physics]
  type = RunException
  input = enclosure0D.i
  cli_args = "ActionComponents/enc/physics=''"
  detail = "no Physics have been defined on an enclosure,"
  expect_err = "A physics must be specified in the enclosure"
[]


[two_physics]
  type = RunException
  input = enclosure0D.i
  cli_args = "ActionComponents/enc/physics='0d_solub multi-D'"
  detail = "more than one Physics have been defined on an enclosure, which is currently not supported,"
  expect_err = "Enclosure0D has only been implemented for a single 'SorptionExchangePhysics'"
[]


[unsupported_physics]
  type = RunException
  input = enclosure0D.i
  cli_args = "ActionComponents/enc/physics='multi-D'"
  detail = "an unsupported Physics has been defined on an enclosure,"
  expect_err = "Physics 'multi-D' is not a 'SorptionExchangePhysics'. This component has only been implemented for 'SorptionExchangePhysics'."
[]


[not_matching]
  type = RunException
  input = enclosure0D.i
  cli_args = "ActionComponents/enc/equilibrium_constants=1 Physics/SorptionExchange/0d_solub/equilibrium_constants=2"
  detail = "both specified and not matching,"
  expect_err = " differs from 'equilibrium_constants' in SorptionExchangePhysics:"
[]


[missing_in_both]
  type = RunException
  input = enclosure0D.i
  detail = "both not specified but necessary to define the equations."
  expect_err = "This parameter should be specified, in the Physics '0d_solub' \(applying to all components\) or in component 'enc'"
[]


[two_enclosures]
  type = CSVDiff
  input = 'enclosure0D.i'
  csvdiff = 'enclosure0D_out.csv'
  design = 'Enclosure0D.md SorptionExchangePhysics.md'
  requirement = 'The system shall be able to model two enclosures connected to the same structure.'
[]


[two_enclosures_two_phys_diff_species]
  type = CSVDiff
  input = 'enclosure0D_two_species.i'
  # same results as 'two_enclosures'
  csvdiff = 'enclosure0D_two_species_out.csv'
  design = 'Enclosure0D.md SorptionExchangePhysics.md'
  requirement = 'The system shall be able to model two enclosures connected to the same structure but holding different species.'
[]


[not_matching]
  type = RunException
  input = enclosure0D.i
  cli_args = "ActionComponents/enc/equilibrium_constants=1 Physics/SorptionExchange/0d_solub/equilibrium_constants=2"
  detail = "both specified and not matching,"
  expect_err = " differs from 'equilibrium_constants' in SorptionExchangePhysics:"
[]


[missing_in_both]
  type = RunException
  input = enclosure0D.i
  detail = "both not specified but necessary to define the equations."
  expect_err = "This parameter should be specified, in the Physics '0d_solub' \(applying to all components\) or in component 'enc'"
[]


[two_enclosures]
  type = CSVDiff
  input = 'enclosure0D.i'
  csvdiff = 'enclosure0D_out.csv'
  design = 'Enclosure0D.md SorptionExchangePhysics.md'
  requirement = 'The system shall be able to model two enclosures connected to the same structure.'
[]


[two_enclosures_two_phys_diff_species]
  type = CSVDiff
  input = 'enclosure0D_two_species.i'
  # same results as 'two_enclosures'
  csvdiff = 'enclosure0D_two_species_out.csv'
  design = 'Enclosure0D.md SorptionExchangePhysics.md'
  requirement = 'The system shall be able to model two enclosures connected to the same structure but holding different species.'
[]


[species_initial_p]
  type = RunException
  input = sorption_exchange.i
  cli_args = "Physics/SorptionExchange/0d_solub/species_initial_pressures='1 2'"
  detail = "the number of species does not match the number of species initial pressures,"
  expect_err = "Parameter 'species' \(size 1\) and 'species_initial_pressures' \(size 2\) must be the same size if set."
[]


[species_equilibrium]
  type = RunException
  input = sorption_exchange.i
  cli_args = "Physics/SorptionExchange/0d_solub/equilibrium_constants='1 2'"
  detail = "the number of species does not match the number of sorption equilibrium constants."
  expect_err = "Parameter 'species' \(size 1\) and 'equilibrium_constants' \(size 2\) must be the same size if set"
[]


[temperature]
  type = RunException
  input = sorption_exchange.i
  cli_args = "Physics/SorptionExchange/0d_solub/temperature=-1 ActionComponents/enc/temperature=-1"
  detail = "the temperature specified is negative,"
  expect_err = "Temperature '-1' on component 'enc' less than or equal to 0 which is not physical"
[]


[temperature_var]
  type = RunException
  input = sorption_exchange.i
  cli_args = "Physics/SorptionExchange/0d_solub/temperature=temp ActionComponents/enc/temperature=temp AuxVariables/temp/family=LAGRANGE"
  detail = "the temperature is specified as a variable which is not currently specified,"
  expect_err = "Only real values are supported"
[]


[scaling_factor]
  type = RunException
  input = sorption_exchange.i
  cli_args = "Physics/SorptionExchange/0d_solub/species_scaling_factors=0 ActionComponents/enc/species_scaling_factors=0"
  detail = "the species equation scaling factor is negative or null,"
  expect_err = "Range check failed for parameter ActionComponents/enc/species_scaling_factors; expression = 'species_scaling_factors>0', component 0"
[]


[initial_pressure]
  type = RunException
  input = sorption_exchange.i
  cli_args = "initial_pressure=-1 Physics/SorptionExchange/0d_solub/species_initial_pressures='-1'"
  detail = "the species initial pressure is negative,"
  expect_err = "Initial condition '-1' for species 'v' on component 'enc' less than 0 which is not physical"
[]


[eq_constant]
  type = RunException
  input = sorption_exchange.i
  cli_args = "Physics/SorptionExchange/0d_solub/equilibrium_constants='0'"
  detail = "the sorption equilibrium constant is negative or null,"
  expect_err = "Equilibrium constant '0' for species 'v' on component 'enc' inferior or equal to 0"
[]


[sorption]
  type = CSVDiff
  input = 'sorption_exchange.i'
  csvdiff = 'sorption_exchange_out.csv'
  design = 'SorptionExchangePhysics.md'
  requirement = 'The system shall be able to accept parameters for species sorption exchange on a component with the sorption exchange physics parameters defined for a single species.'
[]


[species_initial_condition]
  type = RunException
  input = structure1D.i
  cli_args = "ActionComponents/structure/species_initial_concentrations='1 2'"
  detail = "the number of species does not match the number of species initial pressures,"
  expect_err = "The number of species concentrations must match the number of species."
[]


[not_matching_species]
  type = RunException
  input = structure1D.i
  cli_args = "ActionComponents/structure/species='a b c' ActionComponents/structure/species_initial_concentrations='1 1 1'"
  detail = "both specified and not matching for the species,"
  expect_err = "'species' in component 'structure' :"
[]


[not_matching_params]
  type = RunException
  input = structure1D.i
  cli_args = "ActionComponents/structure/temperature=100 Physics/SpeciesTrapping/trapped/temperature=200"
  detail = "both specified and not matching,"
  expect_err = " differs from 'temperature' in SpeciesTrappingPhysics:"
[]


[not_matching_property]
  type = RunException
  input = structure1D.i
  cli_args = "ActionComponents/structure/temperature=100 Physics/SpeciesTrapping/trapped/alpha_t=100"
  detail = "both specified and not matching as a material property,"
  expect_err = "'alpha_t' in component 'structure' :"
[]


[missing_in_both]
  type = RunException
  input = structure1D.i
  detail = "both not specified but necessary to define the equations."
  expect_err = "This parameter should be specified, in the Physics 'trapped' \(applying to all components\) or in component 'structure'"
[]


[not_matching_material_prop]
  type = RunException
  input = structure1D.i
  cli_args = "Physics/SpeciesTrapping/trapped/alpha_t=1e12 ActionComponents/structure/temperature=100"
  detail = "both specified and not matching,"
  expect_err = " differs from 'alpha_t' in SpeciesTrappingPhysics:"
[]


[missing_material_prop]
  type = RunException
  input = structure1D.i
  cli_args = "ActionComponents/structure/property_names='a b c d e f g diff' ActionComponents/structure/temperature=100"
  detail = "both not specified but necessary to define the equations."
  expect_err = "(trapping_energy)|(alpha_t): This parameter should be specified, in the Physics 'trapped' \(applying to all components\) or in component 'structure' using the property_name 'alpha_t'"
[]


[two_structures]
  type = CSVDiff
  input = 'structure1D.i'
  csvdiff = 'structure1D_out.csv'
  design = 'Structure1D.md SpeciesTrappingPhysics.md'
  requirement = 'The system shall be able to model two structures with the same species being trapped.'
[]


[two_structues_same_phys_diff_species_var]
  type = CSVDiff
  input = 'structure1D.i'
  cli_args = "Physics/SpeciesTrapping/trapped/separate_variables_per_component=true
                Physics/SpeciesTrapping/trapped/different_traps_for_each_species=true
                Postprocessors/ave_trapped/variable=trapped_structure
                Postprocessors/ave_trapped/block='structure'
                Postprocessors/ave_trapped_other/type=ElementAverageValue
                Postprocessors/ave_trapped_other/variable=trapped_structure2
                Postprocessors/ave_trapped_other/block=structure2
                Outputs/file_base='two_struct_single_phys'"
  csvdiff = 'two_struct_single_phys.csv'
  design = 'Structure1D.md SpeciesTrappingPhysics.md'
  requirement = 'The system shall be able to model two structures with the same species being trapped but using different variables for each structure.'
[]


[two_structures_diff_species]
  type = CSVDiff
  input = 'structure1D_two_species.i'
  csvdiff = 'structure1D_two_species_out.csv'
  design = 'Structure1D.md SpeciesTrappingPhysics.md'
  requirement = 'The system shall be able to model two structures with different species being trapped.'
[]


[not_matching_species]
  type = RunException
  input = structure1D.i
  cli_args = "ActionComponents/structure/species='a b c' ActionComponents/structure/species_initial_concentrations='1 1 1'"
  detail = "both specified and not matching for the species,"
  expect_err = "'species' in component 'structure' :"
[]


[not_matching_params]
  type = RunException
  input = structure1D.i
  cli_args = "ActionComponents/structure/temperature=100 Physics/SpeciesTrapping/trapped/temperature=200"
  detail = "both specified and not matching,"
  expect_err = " differs from 'temperature' in SpeciesTrappingPhysics:"
[]


[not_matching_property]
  type = RunException
  input = structure1D.i
  cli_args = "ActionComponents/structure/temperature=100 Physics/SpeciesTrapping/trapped/alpha_t=100"
  detail = "both specified and not matching as a material property,"
  expect_err = "'alpha_t' in component 'structure' :"
[]


[missing_in_both]
  type = RunException
  input = structure1D.i
  detail = "both not specified but necessary to define the equations."
  expect_err = "This parameter should be specified, in the Physics 'trapped' \(applying to all components\) or in component 'structure'"
[]


[not_matching_material_prop]
  type = RunException
  input = structure1D.i
  cli_args = "Physics/SpeciesTrapping/trapped/alpha_t=1e12 ActionComponents/structure/temperature=100"
  detail = "both specified and not matching,"
  expect_err = " differs from 'alpha_t' in SpeciesTrappingPhysics:"
[]


[missing_material_prop]
  type = RunException
  input = structure1D.i
  cli_args = "ActionComponents/structure/property_names='a b c d e f g diff' ActionComponents/structure/temperature=100"
  detail = "both not specified but necessary to define the equations."
  expect_err = "(trapping_energy)|(alpha_t): This parameter should be specified, in the Physics 'trapped' \(applying to all components\) or in component 'structure' using the property_name 'alpha_t'"
[]


[two_structures]
  type = CSVDiff
  input = 'structure1D.i'
  csvdiff = 'structure1D_out.csv'
  design = 'Structure1D.md SpeciesTrappingPhysics.md'
  requirement = 'The system shall be able to model two structures with the same species being trapped.'
[]


[two_structues_same_phys_diff_species_var]
  type = CSVDiff
  input = 'structure1D.i'
  cli_args = "Physics/SpeciesTrapping/trapped/separate_variables_per_component=true
                Physics/SpeciesTrapping/trapped/different_traps_for_each_species=true
                Postprocessors/ave_trapped/variable=trapped_structure
                Postprocessors/ave_trapped/block='structure'
                Postprocessors/ave_trapped_other/type=ElementAverageValue
                Postprocessors/ave_trapped_other/variable=trapped_structure2
                Postprocessors/ave_trapped_other/block=structure2
                Outputs/file_base='two_struct_single_phys'"
  csvdiff = 'two_struct_single_phys.csv'
  design = 'Structure1D.md SpeciesTrappingPhysics.md'
  requirement = 'The system shall be able to model two structures with the same species being trapped but using different variables for each structure.'
[]


[two_structures_diff_species]
  type = CSVDiff
  input = 'structure1D_two_species.i'
  csvdiff = 'structure1D_two_species_out.csv'
  design = 'Structure1D.md SpeciesTrappingPhysics.md'
  requirement = 'The system shall be able to model two structures with different species being trapped.'
[]


[repeated_species]
  type = RunException
  input = trapping.i
  cli_args = "Physics/SpeciesTrapping/trapped/species='x x'"
  detail = "a species is repeated twice in the list of species,"
  expect_err = "Item 'x' specified in vector parameter 'species' is repeated, which is not allowed."
[]


[species_initial_concentration]
  type = RunException
  input = trapping.i
  cli_args = "Physics/SpeciesTrapping/trapped/species_initial_concentrations='1 2'"
  detail = "the number of species does not match the number of species initial concentrations,"
  expect_err = "Parameter 'species' \(size 1\) and 'species_initial_concentrations' \(size 2\) must be the same size if set."
[]


[scaling_factors]
  type = RunException
  input = trapping.i
  cli_args = "Physics/SpeciesTrapping/trapped/species_scaling_factors='1 2'"
  detail = "the number of species does not match the number of species balance equation scaling factors."
  expect_err = "Parameter 'species' \(size 1\) and 'species_scaling_factors' \(size 2\) must be the same size if set"
[]


[mobile]
  type = RunException
  input = trapping.i
  cli_args = "Physics/SpeciesTrapping/trapped/mobile='a b'"
  detail = "the number of trapped species does not match the number of mobile species,"
  expect_err = "Parameter 'species' \(size 1\) and 'mobile' \(size 2\) must be the same size if set"
[]


[alpha_t]
  type = RunException
  input = trapping.i
  cli_args = "Physics/SpeciesTrapping/trapped/alpha_t='1 2'"
  detail = "the number of species does not match the number of trapping coefficients,"
  expect_err = "Parameter 'species' \(size 1\) and 'alpha_t' \(size 2\) must be the same size if set"
[]


[Ct0]
  type = RunException
  input = trapping.i
  cli_args = "Physics/SpeciesTrapping/trapped/Ct0=''"
  detail = "the number of species does not match the number of trapping Ct0 coefficients,"
  expect_err = "Parameter 'species' \(size 1\) and 'Ct0' \(size 0\) must be the same size if set"
[]


[alpha_r]
  type = RunException
  input = trapping.i
  cli_args = "Physics/SpeciesTrapping/trapped/alpha_r='1 2'"
  detail = "the number of species does not match the number of release coefficients,"
  expect_err = "Parameter 'species' \(size 1\) and 'alpha_r' \(size 2\) must be the same size if set"
[]


[detrapping]
  type = RunException
  input = trapping.i
  cli_args = "Physics/SpeciesTrapping/trapped/detrapping_energy='1 2'"
  detail = "the number of species does not match the number of detrapping energies."
  expect_err = "Parameter 'species' \(size 1\) and 'detrapping_energy' \(size 2\) must be the same size if set"
[]


[temperature_fun]
  type = RunException
  input = trapping.i
  cli_args = "Physics/SpeciesTrapping/trapped/temperature=temp_fun Functions/temp_fun/type=ConstantFunction Functions/temp_fun/value=1"
  detail = "the temperature is specified as a function when only constants and variables are supported at this time."
  expect_err = "Should be a constant or the name of a variable"
[]


[no_component_yet_asking_for_vars_per_comp]
  type = RunException
  input = trapping.i
  cli_args = "ActionComponents/structure/physics=mobile_diff Physics/SpeciesTrapping/trapped/separate_variables_per_component=true"
  detail = "no components are specified yet the Physics is set to create variables for each component,"
  expect_err = "Physics is not defined on any Component, this parameter should be set to false"
[]


[species]
  type = RunException
  input = trapping.i
  cli_args = "ActionComponents/structure/physics=mobile_diff Physics/SpeciesTrapping/trapped/species=''"
  detail = "the species is not specified,"
  expect_err = "Parameter 'species' should not be set to an empty vector"
[]


[alpha_t]
  type = RunException
  input = trapping.i
  cli_args = "ActionComponents/structure/physics=mobile_diff Physics/SpeciesTrapping/trapped/trapping_energy=0
                  Physics/SpeciesTrapping/trapped/N=1 Physics/SpeciesTrapping/trapped/Ct0=1
                  Physics/SpeciesTrapping/trapped/detrapping_energy=0 Physics/SpeciesTrapping/trapped/trap_per_free=1"
  detail = "the trapping coefficient is not specified,"
  expect_err = "alpha_t: Should not be empty if not using Components"
[]


[trapping_energy]
  type = RunException
  input = trapping.i
  cli_args = "ActionComponents/structure/physics=mobile_diff Physics/SpeciesTrapping/trapped/alpha_t=1"
  detail = "the trapping energy is not specified,"
  expect_err = "trapping_energy: Should not be empty if not using Components"
[]


[N]
  type = RunException
  input = trapping.i
  cli_args = "ActionComponents/structure/physics=mobile_diff Physics/SpeciesTrapping/trapped/alpha_t=1 Physics/SpeciesTrapping/trapped/trapping_energy=0"
  detail = "the number density of the traps is not specified,"
  expect_err = "N: Should not be empty if not using Components"
[]


[Ct0]
  type = RunException
  input = trapping.i
  cli_args = "ActionComponents/structure/physics=mobile_diff Physics/SpeciesTrapping/trapped/alpha_t=1
                  Physics/SpeciesTrapping/trapped/trapping_energy=0 Physics/SpeciesTrapping/trapped/N=1"
  detail = "the trapping Ct0 coefficient is not specified,"
  expect_err = "Ct0: Should not be empty if not using Components"
[]


[trap_per_free]
  type = RunException
  input = trapping.i
  cli_args = "ActionComponents/structure/physics=mobile_diff Physics/SpeciesTrapping/trapped/alpha_t=1
                  Physics/SpeciesTrapping/trapped/trapping_energy=0 Physics/SpeciesTrapping/trapped/N=1 Physics/SpeciesTrapping/trapped/Ct0=1
                  Physics/SpeciesTrapping/trapped/detrapping_energy=0"
  detail = "the number of traps filled per free particle trapped is not specified,"
  expect_err = "trap_per_free: Should not be empty if not using Components"
[]


[alpha_r]
  type = RunException
  input = trapping.i
  cli_args = "ActionComponents/structure/physics=mobile_diff Physics/SpeciesTrapping/trapped/alpha_t=1
                  Physics/SpeciesTrapping/trapped/trapping_energy=0 Physics/SpeciesTrapping/trapped/N=1
                  Physics/SpeciesTrapping/trapped/Ct0=1 Physics/SpeciesTrapping/trapped/trap_per_free=1
                  Physics/SpeciesTrapping/trapped/detrapping_energy=0"
  detail = "the release coefficient is not specified,"
  expect_err = "alpha_r: Should not be empty if not using Components"
[]


[detrapping_energy]
  type = RunException
  input = trapping.i
  cli_args = "ActionComponents/structure/physics=mobile_diff Physics/SpeciesTrapping/trapped/alpha_t=1
                  Physics/SpeciesTrapping/trapped/trapping_energy=0 Physics/SpeciesTrapping/trapped/N=1
                  Physics/SpeciesTrapping/trapped/Ct0=1 Physics/SpeciesTrapping/trapped/trap_per_free=1
                  Physics/SpeciesTrapping/trapped/alpha_r=100"
  detail = "the detrapping energy is not specified."
  expect_err = "detrapping_energy: Should not be empty if not using Components"
[]


[trapping]
  type = CSVDiff
  input = 'species_trapping.i'
  csvdiff = 'species_trapping_out.csv'
  design = 'SpeciesTrappingPhysics.md'
  requirement = 'The system shall be able to accept parameters for species trapping on a component with the trapping physics parameters defined for a single species.'
[]


[trapping_dimensionless_other_trap]
  type = CSVDiff
  input = 'species_trapping_dimensionless_other_trap.i'
  csvdiff = 'species_trapping_dimensionless_other_trap_out.csv'
  design = 'SpeciesTrappingPhysics.md'
  requirement = 'The system shall couple dimensionless trapped species on a component through shared trap occupancy using physics-syntax generated dimensionless trapping kernels.'
[]


[val-2k_natural_oxide_implicit_euler_csvdiff_light]
  type = CSVDiff
  input = val-2k_natural_oxide.i
  cli_args = 'Mesh/active=mesh_coarse
                end_time=4000
                Executioner/nl_rel_tol=1e-4
                Executioner/scheme=implicit-euler
                Executioner/TimeStepper/growth_factor=2
                output_file_base=val-2k_natural_oxide_implicit_euler_light_out'
  csvdiff = val-2k_natural_oxide_implicit_euler_light_out.csv
  requirement = 'The system shall be able to model deuterium transport in self-irradiated tungsten with a 1 nm natural-oxide oxygen-field representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the implicit Euler time integration scheme.'
[]


[val-2k_natural_oxide_implicit_euler_exodiff_light]
  type = Exodiff
  input = val-2k_natural_oxide.i
  exodiff = val-2k_natural_oxide_implicit_euler_light_out.e
  custom_cmp = 'val-2k_natural_oxide_implicit_euler_light_exodus.exodiff'
  prereq = val-2k_natural_oxide_implicit_euler_csvdiff_light
  should_execute = false
  requirement = 'The system shall be able to produce the full field solution of a simulation of deuterium transport in self-irradiated tungsten with a 1 nm natural-oxide oxygen-field representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the implicit Euler time integration scheme.'
[]


[val-2k_natural_oxide_bdf2_csvdiff]
  type = CSVDiff
  input = val-2k_natural_oxide.i
  cli_args = 'output_file_base=val-2k_natural_oxide_out'
  csvdiff = val-2k_natural_oxide_out.csv
  # oxygen_mass_conservation_residual's magnitude is 1e17
  override_columns = 'oxygen_mass_conservation_residual'
  override_abs_zero = '1e12'
  override_rel_err = '1e-3'
  heavy = true
  requirement = 'The system shall be able to model deuterium transport in self-irradiated tungsten with a 1 nm natural-oxide oxygen-field representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the backwards differencing formula of second order (BDF-2) time integration scheme.'
[]


[val-2k_5nm_oxide_bdf2_csvdiff]
  type = CSVDiff
  input = val-2k_5nm_oxide.i
  csvdiff = val-2k_5nm_oxide_out.csv
  rel_err = 1e-5
  # oxygen_mass_conservation_residual's magnitude is 1e17
  override_columns = 'oxygen_mass_conservation_residual'
  override_abs_zero = '1e12'
  override_rel_err = '1e-3'
  heavy = true
  requirement = 'The system shall be able to model deuterium transport in self-irradiated tungsten with a 5 nm oxygen-field oxide representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the backwards differencing formula of second order (BDF-2) time integration scheme.'
[]


[val-2k_10nm_oxide_bdf2_csvdiff]
  type = CSVDiff
  input = val-2k_10nm_oxide.i
  csvdiff = val-2k_10nm_oxide_out.csv
  rel_err = 1e-5
  # oxygen_mass_conservation_residual's magnitude is 1e17
  override_columns = 'oxygen_mass_conservation_residual'
  override_abs_zero = '1e13'
  override_rel_err = '5e-3'
  heavy = true
  requirement = 'The system shall be able to model deuterium transport in self-irradiated tungsten with a 10 nm oxygen-field oxide representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the backwards differencing formula of second order (BDF-2) time integration scheme.'
[]


[val-2k_15nm_oxide_bdf2_csvdiff]
  type = CSVDiff
  input = val-2k_15nm_oxide.i
  csvdiff = val-2k_15nm_oxide_out.csv
  heavy = true
  requirement = 'The system shall be able to model deuterium transport in self-irradiated tungsten with a 15 nm oxygen-field oxide representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the backwards differencing formula of second order (BDF-2) time integration scheme.'
[]


[val-2k_15nm_oxide_initial_profile_csvdiff]
  type = CSVDiff
  input = val-2k_15nm_oxide.i
  csvdiff = val-2k_15nm_oxide_profile_initial_out_line_profile_0000.csv
  prereq = val-2k_15nm_oxide_bdf2_csvdiff
  should_execute = false
  heavy = true
  requirement = 'The system shall be able to output the initial deuterium and oxygen concentration profiles for the 15 nm oxygen-field oxide companion case in val-2k, including the mobile and trapped deuterium populations used to initialize the plotted sectioned profile.'
[]


[val-2k_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2k.py'
  requirement = 'The system shall be able to generate comparison plots for the val-2k validation, comparing the natural-oxide, 5 nm, 10 nm, and 15 nm oxygen-field oxide D2 and D2O release cases against the corresponding experimental data when the matching simulation outputs are available.'
  required_python_packages = 'matplotlib numpy pandas os re tempfile'
[]


[hit_format_hook]
  type = RunCommand
  command = 'bash test-hit-format-hook.sh'
  requirement = 'The system shall support HIT formatting on staged MOOSE input files via enforcement of a pre-commit hook, accepting well-formatted files and rejecting poorly-formatted ones.'
[]

[equilibriumBC_field_variable]
  type = 'CSVDiff'
  input = 'equilibriumBC.i'
  csvdiff = 'equilibriumBC_out.csv'
  issues = '#134'
  design = 'EquilibriumBC.md'
  requirement = 'The system shall compute the equilibrium flux condition between an enclosure and a structure when a field variable is used for the enclosure variable.'
[]


[missing_temp]
  type = RunException
  input = 'equilibriumBC_exceptions.i'
  expect_err = 'The temperature must be specified'
  detail = 'the user does not specify a function or a variable for the equilibrium flux boundary condition,'
[]


[missing_block]
  type = RunException
  input = 'equilibriumBC_exceptions.i'
  cli_args = 'BCs/left/temperature=100 BCs/left/Ko=some_functor'
  expect_err = 'The subdomain of the enclosure should be specified if Ko and Ea are not constants'
  detail = 'the user does not specify the block to use for the nodal evaluation of equilibrium constant.'
[]


[val-2b_heavy_csv]
  type = CSVDiff
  input = val-2b.i
  cli_args = 'Outputs/file_base=val-2b_heavy_out'
  csvdiff = val-2b_heavy_out.csv
  heavy = true
  requirement = 'The system shall be able to model diffusion of deuterium in a beryllium sample and generate CSV data output for comparison to experimental results.'
[]


[val-2b_heavy_exodus]
  type = Exodiff
  input = val-2b.i
  cli_args = 'Outputs/file_base=val-2b_heavy_out'
  exodiff = val-2b_heavy_out.e
  prereq = val-2b_heavy_csv
  should_execute = false # this test relies on the output files from val-2b_heavy_csv, so it shouldn't be run twice
  heavy = true
  abs_zero = 1e-8
  requirement = 'The system shall be able to model diffusion of deuterium in a beryllium sample and generate field and material property data output in the Exodus format for comparison to experimental results.'
[]


[val-2b_exodus]
  type = Exodiff
  input = val-2b.i
  cli_args = "Outputs/file_base=val-2b_out
                Executioner/nl_abs_tol=1e-11
                charge_time='${units 10 h -> s}'
                cooldown_duration=$'{units 1 h -> s}'
                dt_max_large=$'{units 500 s}'
                dt_max_small=$'{units 200 s}'
                dt_start_charging=$'{units 300 s}'
                dt_start_cooldown=$'{units 100 s}'
                dt_start_desorption=$'{units 10 s}'"
  exodiff = val-2b_out.e
  abs_zero = 1e-8
  requirement = 'The system shall be able to model diffusion of deuterium in beryllium sample with a short runtime suitable for regular regression testing.'
[]


[val-2b_exodus_csv]
  type = CSVDiff
  input = val-2b.i
  should_execute = false # this test relies on the output files from val-2b_exodus, so it shouldn't be run twice
  prereq = val-2b_exodus
  cli_args = "Outputs/file_base=val-2b_out
                Executioner/nl_abs_tol=1e-11
                charge_time='${units 10 h -> s}'
                cooldown_duration=$'{units 1 h -> s}'
                dt_max_large=$'{units 500 s}'
                dt_max_small=$'{units 200 s}'
                dt_start_charging=$'{units 300 s}'
                dt_start_cooldown=$'{units 100 s}'
                dt_start_desorption=$'{units 10 s}'"
  csvdiff = val-2b_out.csv
  abs_zero = 1e-8
  requirement = 'The system shall be able to model diffusion of deuterium in beryllium sample with a short runtime suitable for regular regression testing and generate CSV data output for comparison to experimental results.'
[]


[val-2b_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2b.py'
  requirement = 'The system shall be able to generate comparison plots between simulated solutions and experimental data of validation case val-2b, modeling diffusion and release of deuterium in a beryllium sample.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[val-2ea_csvdiff]
  type = CSVDiff
  input = val-2ea.i
  csvdiff = val-2ea_out.csv
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.05 mm thick membrane at 825 K to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2ea]
  type = Exodiff
  input = val-2ea.i
  prereq = val-2ea_csvdiff
  should_execute = False # this test relies on the output files from val-2ea_csvdiff, so it shouldn't be run twice
  exodiff = val-2ea_out.e
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.05 mm thick membrane at 825 K.'
[]


[val-2eb_csvdiff]
  type = CSVDiff
  input = val-2ea.i
  csvdiff = val-2eb_out.csv
  cli_args = 'slab_thickness="${units 2.5e-5 m -> mum}" file_name="val-2eb_out"'
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 825 K to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2eb]
  type = Exodiff
  input = val-2ea.i
  prereq = val-2eb_csvdiff
  should_execute = False # this test relies on the output files from val-2eb_csvdiff, so it shouldn't be run twice
  exodiff = val-2eb_out.e
  cli_args = 'slab_thickness="${units 2.5e-5 m -> mum}" file_name="val-2eb_out"'
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 825 K.'
[]


[val-2ec_csvdiff]
  type = CSVDiff
  input = val-2ea.i
  csvdiff = val-2ec_out.csv
  cli_args = 'temperature="${units 865 K}" slab_thickness="${units 2.5e-5 m -> mum}" file_name="val-2ec_out"'
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 865 K to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2ec]
  type = Exodiff
  input = val-2ea.i
  prereq = val-2ec_csvdiff
  should_execute = False # this test relies on the output files from val-2ec_csvdiff, so it shouldn't be run twice
  exodiff = val-2ec_out.e
  cli_args = 'temperature="${units 865 K}" slab_thickness="${units 2.5e-5 m -> mum}" file_name="val-2ec_out"'
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 865 K and generate an exodus file.'
[]


[val-2ed_csvdiff]
  type = CSVDiff
  input = val-2ed.i
  csvdiff = val-2ed_out.csv
  requirement = 'The system shall be able to model permeation of mixture gas from a 0.025 mm thin membrane at 870 K using lawdep boundary conditions to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2ed]
  type = Exodiff
  input = val-2ed.i
  prereq = val-2ed_csvdiff
  should_execute = False # this test relies on the output files from val-2ed_csvdiff, so it shouldn't be run twice
  exodiff = val-2ed_out.e
  requirement = 'The system shall be able to model permeation of mixture gas with chemical reaction from a  0.025 mm thin membrane at 870 K using lawdep boundary conditions and generate an exodus file.'
[]


[val-2ee_csvdiff]
  type = CSVDiff
  input = val-2ee.i
  csvdiff = val-2ee_out.csv
  requirement = 'The system shall be able to model permeation of mixture gas from a 0.025 mm thin membrane at 870 K using ratedep boundary conditions to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2ee]
  type = Exodiff
  input = val-2ee.i
  prereq = val-2ee_csvdiff
  should_execute = False # this test relies on the output files from val-2ee_csvdiff, so it shouldn't be run twice
  exodiff = val-2ee_out.e
  requirement = 'The system shall be able to model permeation of mixture gas with chemical reaction from a 0.025 mm thin membrane at 870 K using ratedep boundary conditions and generate an exodus file.'
[]


[ver-2e_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2e.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and experimental data of validation case 2e, modeling the permeation of Deuterium from a membrane.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[ver-1a]
  type = Exodiff
  input = ver-1a.i
  exodiff = ver-1a_test_out.e
  cli_args = 'Executioner/dt=5 Mesh/nx=10 Outputs/file_base=ver-1a_test_out'
  requirement = 'The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure.'
[]


[ver-1a_csvdiff]
  type = CSVDiff
  input = ver-1a.i
  should_execute = False # this test relies on the output files from ver-1a, so it shouldn't be run twice
  csvdiff = ver-1a_test_out.csv
  cli_args = 'Executioner/dt=5 Mesh/nx=10 Outputs/file_base=ver-1a_test_out'
  requirement = 'The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1a
[]


[ver-1a-components]
  type = CSVDiff
  input = ver-1a-component.i
  # Note that the additional element prevents an exodiff comparison
  # with [ver-1a]
  csvdiff = ver-1a-component_csv.csv
  cli_args = 'Executioner/dt=5 ActionComponents/structure/nx=10'
  requirement = 'The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure using component syntax to generate CSV data for use in comparisons with the analytic solution.'
[]


[ver-1a_heavy]
  type = Exodiff
  input = ver-1a.i
  exodiff = ver-1a_out.e
  requirement = 'The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure, with the fine mesh and timestep required to match the analytical solution.'
  heavy = true
[]


[ver-1a_heavy_csvdiff]
  type = CSVDiff
  input = ver-1a.i
  should_execute = False # this test relies on the output files from ver-1a_heavy, so it shouldn't be run twice
  csvdiff = ver-1a_csv.csv
  requirement = 'The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.'
  heavy = true
  prereq = ver-1a_heavy
[]


[ver-1a_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1a.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1a, modeling species diffusion through a structure, originating from a depleting source enclosure.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[Shimada2024_run]
  type = Exodiff
  input = 'divertor_monoblock.i'
  exodiff = 'divertor_monoblock_exodus.e'
  cli_args = 'Outputs/exodus/sync_only=true
   Executioner/end_time=1600
   rings_CuCrZr=10
   rings_Cu=8
   rings_W=40
   Executioner/nl_rel_tol=1e-9
   Executioner/nl_abs_tol=1e-11'
  detail = 'pulsed operation.'
  rel_err = 8e-4 # increasing the relative error tolerance because the test is sensitive to the environment. This error is still small for physical problems.
  heavy = true
  min_parallel = 2
  max_time = 1000
[]


[Shimada2024_run-physics]
  type = Exodiff
  input = 'divertor_monoblock_physics.i'
  detail = 'pulsed operation with shorthand physics syntax'
  exodiff = 'divertor_monoblock_physics_exodus.e'
  cli_args = 'Outputs/exodus/sync_only=true
   Executioner/end_time=1600
   rings_CuCrZr=10
   rings_Cu=8
   rings_W=40
   Executioner/nl_rel_tol=1e-9
   Executioner/nl_abs_tol=1e-11'
  rel_err = 8e-4 # increasing the relative error tolerance because the test is sensitive to the environment. This error is still small for physical problems.
  heavy = true
  min_parallel = 2
  max_time = 1000
  custom_cmp = 'physics_comp.cmp'
[]


[Shimada2024_run-physics_single-variable]
  type = CSVDiff
  input = 'divertor_monoblock_physics-single-variable.i'
  csvdiff = 'divertor_monoblock_physics-single-variable_out.csv'
  cli_args = 'Outputs/exodus/sync_only=true
   Executioner/end_time=100
   rings_CuCrZr=10
   rings_Cu=8
   rings_W=40
   Executioner/nl_rel_tol=1e-9
   Executioner/nl_abs_tol=1e-11'
  detail = 'pulsed operation with a single tritium variable and physics syntax'
  rel_err = 8e-4 # increasing the relative error tolerance because the test is sensitive to the environment. This error is still small for physical problems.
  abs_zero = 3e-9
  heavy = true
  min_parallel = 2
  max_time = 1000
[]


[steady_run]
  type = JSONDiff
  input = 'steady_state_sobol.i'
  detail = 'steady operation'
  cli_args = 'runner:Mesh/ccmg/rings="1 3 3 3" runner:Mesh/ccmg/num_sectors=4 Outputs/out/file_base=steady_state_sobol runner:Executioner/end_time=250'
  jsondiff = 'steady_state_sobol.json'
  skip_keys = 'SECOND_ORDER results_results:Scaled_Tritium_Flux:value matrix_results:F_permeation:value results:F_permeation:value results_results:F_permeation:value'
  heavy = true
  min_parallel = 4
  rel_err = 20
[]


[shutdown_run]
  type = JSONDiff
  input = 'shutdown_transient_sobol.i'
  detail = 'a shutdown transient after steady operation'
  cli_args = 'runner:Mesh/ccmg/rings="1 3 3 3" runner:Mesh/ccmg/num_sectors=4 Outputs/out/file_base=shutdown_transient_sobol runner:Executioner/end_time=250'
  jsondiff = 'shutdown_transient_sobol.json'
  skip_keys = 'SECOND_ORDER sobol results_results:Scaled_Tritium_Flux:value matrix_results:F_permeation:value results:F_permeation:value results_results:F_permeation:value'
  heavy = true
  min_parallel = 4
  rel_err = 20
[]


[elm_run]
  type = JSONDiff
  input = 'elm_transient_sobol.i'
  detail = 'an ELM transient after steady operation'
  cli_args = 'runner:Mesh/ccmg/rings="1 3 3 3" Outputs/out/file_base=elm_transient_sobol runner:Executioner/end_time=2.000005e2 Samplers/hypercube_1/num_rows=5 Samplers/hypercube_2/num_rows=5 runner:/Mesh/ccmg/num_sectors=4'
  jsondiff = 'elm_transient_sobol.json'
  heavy = true
  skip_keys = 'sobol stats'
  min_parallel = 4
  rel_err = 20
[]


[python_comparison]
  type = RunCommand
  command = 'python3 divertor_monoblock_sensitivity.py'
  design = 'divertor_monoblock/sensitivity.md'
  requirement = 'The system shall be able to generate documentation plots from intensive stochastic runs'
  required_python_packages = 'numpy pandas scipy matplotlib os sys tables'
[]


[Abdou2021]
  type = CSVDiff
  input = 'fuel_cycle.i'
  csvdiff = 'fuel_cycle_out.csv'
  requirement = 'The system shall reproduce a consistent solution to an ODE system of equations modeling the tritium fuel cycle.'
[]


[fuel_cycle_Abdou_comparison]
  type = RunCommand
  command = 'python3 plot_comparison.py'
  requirement = 'The system shall be able to generate comparison plots between the simulated solution from TMAP8 and Abdou et al. (2020), modeling tritium fuel cycle.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[gui]
  type = RunCommand
  command = 'python3 fuel_cycle_gui.py --test'
  capabilities = 'installation_type=in_tree' # See #207
  requirement = 'The system shall be able to open a graphical interface for the tritium fuel cycle example for user training.'
  required_python_packages = 'tempfile tkinter re subprocess matplotlib numpy scipy atexit shutil atexit os'
[]


[fuel_cycle_benchmarking_csvdiff]
  type = CSVDiff
  input = 'fuel_cycle.i'
  cli_args = 'initial_refinement_time="${units 17000 s}" Outputs/file_base=fuel_cycle_limited_out'
  csvdiff = fuel_cycle_limited_out.csv
  requirement = 'The system shall be able to model the tritium fuel cycle from Meschini et al. (2023).'
[]


[fuel_cycle_benchmarking_heavy_csvdiff]
  type = CSVDiff
  input = 'fuel_cycle.i'
  csvdiff = fuel_cycle_out.csv
  heavy = true
  requirement = 'The system shall be able to the model tritium fuel cycle from Meschini et al. (2023) with fine time step.'
[]


[fuel_cycle_benchmarking_comparison]
  type = RunCommand
  command = 'python3 comparison_fuel_cycle_benchmark.py'
  requirement = 'The system shall be able to generate comparison plots between the simulated solution from TMAP8 and Meschini et al. (2023), modeling tritium fuel cycle.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1ka_csv]
  type = CSVDiff
  input = ver-1ka.i
  csvdiff = ver-1ka_out.csv
  requirement = 'The system shall be able to model a tritium volumetric source in one enclosure and to generate CSV data for use in comparisons with the analytic solution.'
[]


[ver-1ka_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1ka.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1ka, modeling a tritium volumetric source in one enclosure.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[Abdou2021]
  type = CSVDiff
  input = 'fuel_cycle.i'
  csvdiff = 'fuel_cycle_out.csv'
  requirement = 'The system shall reproduce a consistent solution to an ODE system of equations modeling the tritium fuel cycle.'
[]


[fuel_cycle_Abdou_comparison]
  type = RunCommand
  command = 'python3 plot_comparison.py'
  requirement = 'The system shall be able to generate comparison plots between the simulated solution from TMAP8 and Abdou et al. (2020), modeling tritium fuel cycle.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[gui]
  type = RunCommand
  command = 'python3 fuel_cycle_gui.py --test'
  capabilities = 'installation_type=in_tree' # See #207
  requirement = 'The system shall be able to open a graphical interface for the tritium fuel cycle example for user training.'
  required_python_packages = 'tempfile tkinter re subprocess matplotlib numpy scipy atexit shutil atexit os'
[]


[fuel_cycle_benchmarking_csvdiff]
  type = CSVDiff
  input = 'fuel_cycle.i'
  cli_args = 'initial_refinement_time="${units 17000 s}" Outputs/file_base=fuel_cycle_limited_out'
  csvdiff = fuel_cycle_limited_out.csv
  requirement = 'The system shall be able to model the tritium fuel cycle from Meschini et al. (2023).'
[]


[fuel_cycle_benchmarking_heavy_csvdiff]
  type = CSVDiff
  input = 'fuel_cycle.i'
  csvdiff = fuel_cycle_out.csv
  heavy = true
  requirement = 'The system shall be able to the model tritium fuel cycle from Meschini et al. (2023) with fine time step.'
[]


[fuel_cycle_benchmarking_comparison]
  type = RunCommand
  command = 'python3 comparison_fuel_cycle_benchmark.py'
  requirement = 'The system shall be able to generate comparison plots between the simulated solution from TMAP8 and Meschini et al. (2023), modeling tritium fuel cycle.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1ka_csv]
  type = CSVDiff
  input = ver-1ka.i
  csvdiff = ver-1ka_out.csv
  requirement = 'The system shall be able to model a tritium volumetric source in one enclosure and to generate CSV data for use in comparisons with the analytic solution.'
[]


[ver-1ka_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1ka.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1ka, modeling a tritium volumetric source in one enclosure.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[fuel_cycle_kernel]
  type = CSVDiff
  input = 'fuel_cycle_abdou_generic.i'
  issues = '#329'
  design = 'FuelCycleSystemScalarKernel.md'
  csvdiff = 'fuel_cycle_abdou_generic_csv.csv'
  cli_args = 'Outputs/csv/append_restart=true'
  rel_err = 1.6e-6
  requirement = 'The system shall reproduce a consistent solution to an ODE system of equations modeling the tritium fuel cycle with a built-in kernel.'
[]


[fuel_cycle_kernel_ss]
  type = CSVDiff
  input = 'ss_kernel.i'
  issues = '#329'
  design = 'FuelCycleSystemScalarKernel.md'
  csvdiff = 'ss_kernel_out.csv'
  requirement = 'The fuel cycle system kernel shall have a steady-state flag that will allow the kernel to neglect time-dependent contributions.'
[]


[fuel_cycle_kernel_implicit]
  type = CSVDiff
  input = 'ss_kernel.i'
  issues = '#329'
  design = 'FuelCycleSystemScalarKernel.md'
  cli_args = 'ScalarKernels/I1/steady_state=false ScalarKernels/I1/is_implicit=true Outputs/file_base=ss_kernel_implicit_out'
  csvdiff = 'ss_kernel_implicit_out.csv'
  requirement = 'The fuel cycle system kernel shall run with either current or old state inputs.'
[]


[fuel_cycle_kernel_implicit_ss]
  type = CSVDiff
  input = 'ss_kernel.i'
  issues = '#329'
  design = 'FuelCycleSystemScalarKernel.md'
  cli_args = 'ScalarKernels/I1/steady_state=true ScalarKernels/I1/is_implicit=true Outputs/file_base=ss_kernel_implicit_ss_out'
  csvdiff = 'ss_kernel_implicit_ss_out.csv'
  requirement = 'The fuel cycle system kernel shall run with either current or old state inputs under steady-state.'
[]


[fuel_cycle_kernel_inputs_mismatch]
  type = RunException
  input = 'ss_kernel.i'
  issues = '#329'
  design = 'FuelCycleSystemScalarKernel.md'
  cli_args = 'ScalarKernels/I1/input_fractions=0.2'
  expect_err = '"input_fractions" must be defined with the same length as "inputs".'
  requirement = 'The fuel cycle system kernel shall not run with inconsistent inputs.'
[]


[fuel_cycle_kernel_invalid_coupling]
  type = RunException
  input = 'ss_kernel.i'
  issues = '#329'
  design = 'FuelCycleSystemScalarKernel.md'
  cli_args = 'ScalarKernels/I1/input_fractions=0.2 ScalarKernels/I1/inputs=T_01_BZ'
  expect_err = 'Primary variable cannot be listed as a coupled variable'
  requirement = 'The fuel cycle system kernel shall not run with the primary variable listed in inputs.'
[]


[fuel_cycle_kernel_AD]
  type = CSVDiff
  input = 'fuel_cycle_abdou_generic_AD.i'
  issues = '#329'
  design = 'FuelCycleSystemScalarKernel.md'
  csvdiff = 'fuel_cycle_abdou_generic_AD_csv.csv'
  cli_args = 'Outputs/csv/append_restart=true'
  rel_err = 1.6e-6
  requirement = 'The system shall reproduce a consistent solution to an ODE system of equations modeling the tritium fuel cycle with a built-in AD kernel.'
[]


[Sievert_non_ad]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions.'
  type = 'Exodiff'
  input = 'interface_sorption.i'
  cli_args = 'Outputs/file_base=interface_sorption_Sievert_non_ad_out'
  exodiff = 'interface_sorption_Sievert_non_ad_out.e'
  abs_zero = 1e-7
  mesh_mode = REPLICATED
[]


[Sievert_non_ad_penalty]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions using a penalty-enforced flux balance.'
  type = 'Exodiff'
  input = 'interface_sorption.i'
  cli_args = 'InterfaceKernels/interface/use_flux_penalty=true
                InterfaceKernels/interface/flux_penalty=1e5
                Outputs/file_base=interface_sorption_Sievert_non_ad_penalty_out'
  exodiff = 'interface_sorption_Sievert_non_ad_penalty_out.e'
  abs_zero = 1e-7
  mesh_mode = REPLICATED
[]


[Sievert_ad]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions using automatic differentiation.'
  type = 'Exodiff'
  input = 'interface_sorption.i'
  cli_args = 'Kernels/u1/type=ADMatDiffusion
                Kernels/u2/type=ADMatDiffusion
                Kernels/temperature/type=ADHeatConduction
                InterfaceKernels/interface/type=ADInterfaceSorption
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_2/type=ADGenericConstantMaterial
                Postprocessors/flux_inner/type=ADSideDiffusiveFluxIntegral
                Postprocessors/flux_outer/type=ADSideDiffusiveFluxIntegral
                Outputs/file_base=interface_sorption_Sievert_ad_out'
  exodiff = 'interface_sorption_Sievert_ad_out.e'
  abs_zero = 1e-7
  mesh_mode = REPLICATED
[]


[Sievert_ad_penalty]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions using automatic differentiation and a penalty-enforced flux balance.'
  type = 'Exodiff'
  input = 'interface_sorption.i'
  cli_args = 'Kernels/u1/type=ADMatDiffusion
                Kernels/u2/type=ADMatDiffusion
                Kernels/temperature/type=ADHeatConduction
                InterfaceKernels/interface/type=ADInterfaceSorption
                InterfaceKernels/interface/use_flux_penalty=true
                InterfaceKernels/interface/flux_penalty=1e5
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_2/type=ADGenericConstantMaterial
                Postprocessors/flux_inner/type=ADSideDiffusiveFluxIntegral
                Postprocessors/flux_outer/type=ADSideDiffusiveFluxIntegral
                Outputs/file_base=interface_sorption_Sievert_ad_penalty_out'
  exodiff = 'interface_sorption_Sievert_ad_penalty_out.e'
  abs_zero = 1e-7
  mesh_mode = REPLICATED
[]


[Henry_non_ad]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions.'
  type = 'Exodiff'
  input = 'interface_sorption.i'
  cli_args = 'InterfaceKernels/interface/n_sorption=1 Outputs/file_base=interface_sorption_Henry_non_ad_out'
  exodiff = 'interface_sorption_Henry_non_ad_out.e'
  abs_zero = 1e-7
  mesh_mode = REPLICATED
[]


[Henry_non_ad_penalty]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions using a penalty-enforced flux balance.'
  type = 'Exodiff'
  input = 'interface_sorption.i'
  cli_args = 'InterfaceKernels/interface/use_flux_penalty=true
                InterfaceKernels/interface/flux_penalty=1e5
                InterfaceKernels/interface/n_sorption=1
                Outputs/file_base=interface_sorption_Henry_non_ad_penalty_out'
  exodiff = 'interface_sorption_Henry_non_ad_penalty_out.e'
  abs_zero = 1e-7
  mesh_mode = REPLICATED
[]


[Henry_ad]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions using automatic differentiation.'
  type = 'Exodiff'
  input = 'interface_sorption.i'
  cli_args = 'Kernels/u1/type=ADMatDiffusion
                Kernels/u2/type=ADMatDiffusion
                Kernels/temperature/type=ADHeatConduction
                InterfaceKernels/interface/type=ADInterfaceSorption
                InterfaceKernels/interface/n_sorption=1
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_2/type=ADGenericConstantMaterial
                Postprocessors/flux_inner/type=ADSideDiffusiveFluxIntegral
                Postprocessors/flux_outer/type=ADSideDiffusiveFluxIntegral
                Outputs/file_base=interface_sorption_Henry_ad_out'
  exodiff = 'interface_sorption_Henry_ad_out.e'
  abs_zero = 1e-7
  mesh_mode = REPLICATED
[]


[Henry_ad_penalty]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions using automatic differentiation and a penalty-enforced flux balance.'
  type = 'Exodiff'
  input = 'interface_sorption.i'
  cli_args = 'Kernels/u1/type=ADMatDiffusion
                Kernels/u2/type=ADMatDiffusion
                Kernels/temperature/type=ADHeatConduction
                InterfaceKernels/interface/type=ADInterfaceSorption
                InterfaceKernels/interface/n_sorption=1
                InterfaceKernels/interface/use_flux_penalty=true
                InterfaceKernels/interface/flux_penalty=1e5
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_2/type=ADGenericConstantMaterial
                Postprocessors/flux_inner/type=ADSideDiffusiveFluxIntegral
                Postprocessors/flux_outer/type=ADSideDiffusiveFluxIntegral
                Outputs/file_base=interface_sorption_Henry_ad_penalty_out'
  exodiff = 'interface_sorption_Henry_ad_penalty_out.e'
  abs_zero = 1e-7
  mesh_mode = REPLICATED
[]


[Sievert_transient_non_ad]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions during transient simulations.'
  type = 'Exodiff'
  input = 'interface_sorption_transient.i'
  cli_args = 'Outputs/file_base=interface_sorption_transient_Sievert_non_ad_out'
  exodiff = 'interface_sorption_transient_Sievert_non_ad_out.e'
  mesh_mode = REPLICATED
[]


[Sievert_transient_ad]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions using automatic differentiation during transient simulations.'
  type = 'Exodiff'
  input = 'interface_sorption_transient.i'
  cli_args = 'Kernels/u1_time_derivative/type=ADTimeDerivative
                Kernels/u2_time_derivative/type=ADTimeDerivative
                Kernels/temperature/type=ADTimeDerivative
                Kernels/u1_diffusion/type=ADMatDiffusion
                Kernels/u2_diffusion/type=ADMatDiffusion
                Kernels/temperature/type=ADHeatConduction
                InterfaceKernels/interface/type=ADInterfaceSorption
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_2/type=ADGenericConstantMaterial
                Postprocessors/flux_inner/type=ADSideDiffusiveFluxIntegral
                Postprocessors/flux_outer/type=ADSideDiffusiveFluxIntegral
                Outputs/file_base=interface_sorption_transient_Sievert_ad_out
                Executioner/nl_rel_tol=1e-7
                Executioner/nl_abs_tol=1e-12'
  exodiff = 'interface_sorption_transient_Sievert_ad_out.e'
  mesh_mode = REPLICATED
[]


[Sievert_transient_non_ad_scaling]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions during transient simulations with unit scaling on both variables.'
  type = 'Exodiff'
  input = 'interface_sorption_transient.i'
  cli_args = 'unit_scale=4
                unit_scale_neighbor=6
                Outputs/file_base=interface_sorption_transient_Sievert_non_ad_scaling_out'
  exodiff = 'interface_sorption_transient_Sievert_non_ad_scaling_out.e'
  mesh_mode = REPLICATED
[]


[Sievert_transient_ad_scaling]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions using automatic differentiation during transient simulations with unit scaling on both variables.'
  type = 'Exodiff'
  input = 'interface_sorption_transient.i'
  cli_args = 'unit_scale=4
                unit_scale_neighbor=6
                Kernels/u1_time_derivative/type=ADTimeDerivative
                Kernels/u2_time_derivative/type=ADTimeDerivative
                Kernels/temperature/type=ADTimeDerivative
                Kernels/u1_diffusion/type=ADMatDiffusion
                Kernels/u2_diffusion/type=ADMatDiffusion
                Kernels/temperature/type=ADHeatConduction
                InterfaceKernels/interface/type=ADInterfaceSorption
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_2/type=ADGenericConstantMaterial
                Postprocessors/flux_inner/type=ADSideDiffusiveFluxIntegral
                Postprocessors/flux_outer/type=ADSideDiffusiveFluxIntegral
                Outputs/file_base=interface_sorption_transient_Sievert_ad_scaling_out
                Executioner/nl_abs_tol=5e-12'
  exodiff = 'interface_sorption_transient_Sievert_ad_scaling_out.e'
  mesh_mode = REPLICATED
[]


[Sievert_transient_non_ad_penalty_scaling]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions using a penalty-enforced flux balance during transient simulations with unit scaling on both variables.'
  type = 'Exodiff'
  input = 'interface_sorption_transient.i'
  cli_args = 'unit_scale=4
                unit_scale_neighbor=6
                InterfaceKernels/interface/use_flux_penalty=true
                InterfaceKernels/interface/flux_penalty=1e1
                Outputs/file_base=interface_sorption_transient_Sievert_non_ad_penalty_scaling_out'
  exodiff = 'interface_sorption_transient_Sievert_non_ad_penalty_scaling_out.e'
  mesh_mode = REPLICATED
[]


[Sievert_transient_non_ad_penalty_scaling_comparison]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions using a penalty-enforced flux balance during transient simulations with unit scaling on both variables and provide similar results to the approach without the penalty-enforced flux balance.'
  type = 'Exodiff'
  input = 'interface_sorption_transient.i'
  cli_args = 'unit_scale=4
                unit_scale_neighbor=6
                InterfaceKernels/interface/use_flux_penalty=true
                InterfaceKernels/interface/flux_penalty=1e1
                Outputs/file_base=interface_sorption_transient_Sievert_non_ad_penalty_scaling_comparison_out'
  exodiff = 'interface_sorption_transient_Sievert_non_ad_penalty_scaling_comparison_out.e'
  # compared to Sievert_transient_non_ad_scaling because it is supposed to be equivalent,
  # but the residuals are expected to be different when the penalty is used, so the relative error tolerance is increased here
  rel_err = 8.5e-2
  mesh_mode = REPLICATED
[]


[Sievert_transient_ad_penalty_scaling]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Sievert law in isothermal conditions using automatic differentiation and a penalty-enforced flux balance during transient simulations with unit scaling on both variables.'
  type = 'Exodiff'
  input = 'interface_sorption_transient.i'
  cli_args = 'unit_scale=4
                unit_scale_neighbor=6
                Kernels/u1_time_derivative/type=ADTimeDerivative
                Kernels/u2_time_derivative/type=ADTimeDerivative
                Kernels/temperature/type=ADTimeDerivative
                Kernels/u1_diffusion/type=ADMatDiffusion
                Kernels/u2_diffusion/type=ADMatDiffusion
                Kernels/temperature/type=ADHeatConduction
                InterfaceKernels/interface/type=ADInterfaceSorption
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_2/type=ADGenericConstantMaterial
                Postprocessors/flux_inner/type=ADSideDiffusiveFluxIntegral
                Postprocessors/flux_outer/type=ADSideDiffusiveFluxIntegral
                InterfaceKernels/interface/use_flux_penalty=true
                InterfaceKernels/interface/flux_penalty=1e1
                Outputs/file_base=interface_sorption_transient_Sievert_ad_penalty_scaling_out
                Executioner/nl_abs_tol=1e-12'
  exodiff = 'interface_sorption_transient_Sievert_ad_penalty_scaling_out.e'
  # compared to Sievert_transient_non_ad_scaling because it is supposed to be equivalent,
  # but the residuals are expected to be different when the penalty is used, so the relative error tolerance is increased here
  rel_err = 8.5e-2
  mesh_mode = REPLICATED
[]


[Henry_transient_non_ad]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions during transient simulations.'
  type = 'Exodiff'
  input = 'interface_sorption_transient.i'
  cli_args = 'n_sorption=1
                Outputs/file_base=interface_sorption_transient_Henry_non_ad_out'
  exodiff = 'interface_sorption_transient_Henry_non_ad_out.e'
  mesh_mode = REPLICATED
[]


[Henry_transient_ad]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions using automatic differentiation during transient simulations.'
  type = 'Exodiff'
  input = 'interface_sorption_transient.i'
  cli_args = 'n_sorption=1
                Kernels/u1_time_derivative/type=ADTimeDerivative
                Kernels/u2_time_derivative/type=ADTimeDerivative
                Kernels/temperature/type=ADTimeDerivative
                Kernels/u1_diffusion/type=ADMatDiffusion
                Kernels/u2_diffusion/type=ADMatDiffusion
                Kernels/temperature/type=ADHeatConduction
                InterfaceKernels/interface/type=ADInterfaceSorption
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_2/type=ADGenericConstantMaterial
                Postprocessors/flux_inner/type=ADSideDiffusiveFluxIntegral
                Postprocessors/flux_outer/type=ADSideDiffusiveFluxIntegral
                Outputs/file_base=interface_sorption_transient_Henry_ad_out
                Executioner/nl_rel_tol=1e-7
                Executioner/nl_abs_tol=1e-12'
  exodiff = 'interface_sorption_transient_Henry_ad_out.e'
  mesh_mode = REPLICATED
[]


[Henry_transient_non_ad_scaling]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions during transient simulations with unit scaling on both variables.'
  type = 'Exodiff'
  input = 'interface_sorption_transient.i'
  cli_args = 'n_sorption=1
                unit_scale=4
                unit_scale_neighbor=6
                Outputs/file_base=interface_sorption_transient_Henry_non_ad_scaling_out'
  exodiff = 'interface_sorption_transient_Henry_non_ad_scaling_out.e'
  mesh_mode = REPLICATED
[]


[Henry_transient_ad_scaling]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions using automatic differentiation during transient simulation with unit scaling on both variables.'
  type = 'Exodiff'
  input = 'interface_sorption_transient.i'
  cli_args = 'n_sorption=1
                unit_scale=4
                unit_scale_neighbor=6
                Kernels/u1_time_derivative/type=ADTimeDerivative
                Kernels/u2_time_derivative/type=ADTimeDerivative
                Kernels/temperature/type=ADTimeDerivative
                Kernels/u1_diffusion/type=ADMatDiffusion
                Kernels/u2_diffusion/type=ADMatDiffusion
                Kernels/temperature/type=ADHeatConduction
                InterfaceKernels/interface/type=ADInterfaceSorption
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_2/type=ADGenericConstantMaterial
                Postprocessors/flux_inner/type=ADSideDiffusiveFluxIntegral
                Postprocessors/flux_outer/type=ADSideDiffusiveFluxIntegral
                Outputs/file_base=interface_sorption_transient_Henry_ad_scaling_out
                Executioner/nl_abs_tol=5e-12'
  exodiff = 'interface_sorption_transient_Henry_ad_scaling_out.e'
  mesh_mode = REPLICATED
[]


[Henry_transient_non_ad_penalty_scaling]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions using a penalty-enforced flux balance during transient simulations with unit scaling on both variables.'
  type = 'Exodiff'
  input = 'interface_sorption_transient.i'
  cli_args = 'n_sorption=1
                unit_scale=4
                unit_scale_neighbor=6
                InterfaceKernels/interface/use_flux_penalty=true
                InterfaceKernels/interface/flux_penalty=1e1
                Outputs/file_base=interface_sorption_transient_Henry_non_ad_penalty_scaling_out'
  exodiff = 'interface_sorption_transient_Henry_non_ad_penalty_scaling_out.e'
  mesh_mode = REPLICATED
[]


[Henry_transient_non_ad_penalty_scaling_comparison]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions using a penalty-enforced flux balance during transient simulations with unit scaling on both variables and provide similar results to the approach without the penalty-enforced flux balance.'
  type = 'Exodiff'
  input = 'interface_sorption_transient.i'
  cli_args = 'n_sorption=1
                unit_scale=4
                unit_scale_neighbor=6
                InterfaceKernels/interface/use_flux_penalty=true
                InterfaceKernels/interface/flux_penalty=1e1
                Outputs/file_base=interface_sorption_transient_Henry_non_ad_penalty_scaling_comparison_out'
  exodiff = 'interface_sorption_transient_Henry_non_ad_penalty_scaling_comparison_out.e'
  # compared to Henry_transient_non_ad_scaling because it is supposed to be equivalent,
  # but the residuals are expected to be different when the penalty is used, so the relative error tolerance is increased here
  rel_err = 5.4e-2
  mesh_mode = REPLICATED
[]


[Henry_transient_ad_penalty_scaling]
  requirement = 'The system shall have the capability to enforce interfacial conditions based on the Henry law in isothermal conditions using automatic differentiation and a penalty-enforced flux balance during transient simulations with unit scaling on both variables.'
  type = 'Exodiff'
  input = 'interface_sorption_transient.i'
  cli_args = 'n_sorption=1
                unit_scale=4
                unit_scale_neighbor=6
                Kernels/u1_time_derivative/type=ADTimeDerivative
                Kernels/u2_time_derivative/type=ADTimeDerivative
                Kernels/temperature/type=ADTimeDerivative
                Kernels/u1_diffusion/type=ADMatDiffusion
                Kernels/u2_diffusion/type=ADMatDiffusion
                Kernels/temperature/type=ADHeatConduction
                InterfaceKernels/interface/type=ADInterfaceSorption
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_1/type=ADGenericConstantMaterial
                Materials/properties_2/type=ADGenericConstantMaterial
                Postprocessors/flux_inner/type=ADSideDiffusiveFluxIntegral
                Postprocessors/flux_outer/type=ADSideDiffusiveFluxIntegral
                InterfaceKernels/interface/use_flux_penalty=true
                InterfaceKernels/interface/flux_penalty=1e1
                Outputs/file_base=interface_sorption_transient_Henry_ad_penalty_scaling_out
                Executioner/nl_abs_tol=1e-12'
  exodiff = 'interface_sorption_transient_Henry_ad_penalty_scaling_out.e'
  # compared to Henry_transient_non_ad_scaling because it is supposed to be equivalent,
  # but the residuals are expected to be different when the penalty is used, so the relative error tolerance is increased here
  rel_err = 5.4e-2
  mesh_mode = REPLICATED
[]


[ver-1kb_csv_without_concentration_jump]
  type = CSVDiff
  input = ver-1kb.i
  csvdiff = ver-1kb_out_k1.csv
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law without any concentration jump at the interface.'
[]


[ver-1kb_csv_concentration_jump]
  type = CSVDiff
  input = ver-1kb.i
  cli_args = "solubility='${fparse 10/(R*temperature)}'
                Outputs/file_base=ver-1kb_out_k10"
  csvdiff = ver-1kb_out_k10.csv
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law with a concentration jump at the interface.'
[]


[ver-1kb_exodus_concentration_jump]
  type = Exodiff
  input = ver-1kb.i
  exodiff = ver-1kb_out_k10.e
  cli_args = "solubility='${fparse 10/(R*temperature)}'
                Outputs/file_base=ver-1kb_out_k10"
  prereq = ver-1kb_csv_concentration_jump
  should_execute = false # this test relies on the output files from ver-1kb_csv_concentration_jump, so it shouldn't be run twice
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Henry’s law with a concentration jump at the interface to generate csv for use in comparisons with the analytic solution.'
[]


[ver-1kb_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1kb.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kb, modeling a diffusion across a membrane separating two enclosures in accordance with Henry’s law.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[ver-1kc-1_csv]
  type = CSVDiff
  input = ver-1kc-1.i
  cli_args = "nb_segments_TMAP8=1e1
                simulation_time=4
                Executioner/nl_abs_tol=1e-5
                Executioner/nl_rel_tol=1e-4
                Outputs/exodus=false
                Outputs/file_base=ver-1kc-1_out_k10_light"
  csvdiff = ver-1kc-1_out_k10_light.csv
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface.'
[]


[ver-1kc-1_csv_heavy]
  type = CSVDiff
  heavy = true
  input = ver-1kc-1.i
  csvdiff = ver-1kc-1_out_k10.csv
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with a fine mesh and tight tolerances for higher accuracy.'
[]


[ver-1kc-1_exodus_heavy]
  type = Exodiff
  heavy = true
  input = ver-1kc-1.i
  exodiff = ver-1kc-1_out_k10.e
  prereq = ver-1kc-1_csv_heavy
  should_execute = false # this test relies on the output files from ver-1kc-1_csv_concentration_jump, so it shouldn't be run twice
  requirement = 'The system shall be able to model the diffusion of T2 across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with a fine mesh and tight tolerances for higher accuracy and generate an exodus file.'
[]


[ver-1kc-1_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1kc-1.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kc-1, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[ver-1kc-2_csv]
  type = CSVDiff
  input = ver-1kc-2.i
  cli_args = "simulation_time=0.05
                Executioner/nl_rel_tol=1e-6
                Outputs/file_base=ver-1kc-2_out_k10_light"
  csvdiff = ver-1kc-2_out_k10_light.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface.'
[]


[ver-1kc-2_csv_heavy]
  type = CSVDiff
  heavy = true
  input = ver-1kc-2.i
  csvdiff = ver-1kc-2_out_k10.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with tight tolerances for higher accuracy.'
[]


[ver-1kc-2_exodus_heavy]
  type = Exodiff
  heavy = true
  input = ver-1kc-2.i
  exodiff = ver-1kc-2_out_k10.e
  prereq = ver-1kc-2_csv_heavy
  should_execute = false # this test relies on the output files from ver-1kc-2_csv_heavy, so it shouldn't be run twice
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and generate an exodus file with tight tolerances for higher accuracy.'
[]


[ver-1kc-2_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1kc-2.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kc-2, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[ver-1kd_csv]
  type = CSVDiff
  input = ver-1kd.i
  cli_args = "simulation_time=0.05
                Executioner/nl_rel_tol=1e-6
                Outputs/exodus=false
                Outputs/file_base=ver-1kd_out_k10_light"
  csvdiff = ver-1kd_out_k10_light.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term.'
[]


[ver-1kd_csv_heavy]
  type = CSVDiff
  heavy = true
  input = ver-1kd.i
  csvdiff = ver-1kd_out_k10.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term with tight tolerances for higher accuracy.'
[]


[ver-1kd_exodus_heavy]
  type = Exodiff
  heavy = true
  input = ver-1kd.i
  exodiff = ver-1kd_out_k10.e
  prereq = ver-1kd_csv_heavy
  should_execute = false # this test relies on the output files from ver-1kd_csv_heavy, so it shouldn't be run twice
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term and generate an exodus file with tight tolerances for higher accuracy.'
[]


[ver-1kd_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1kd.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kd, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law  and a T2 volumetric source term.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]

[ad_mat_coupled_annihilation]
  type = 'Exodiff'
  input = 'ad_mat_coupled_annihilation_test.i'
  exodiff = 'ad_mat_coupled_annihilation_test_out.e'
  issues = '#35'
  design = '/ADMatCoupledDefectAnnihilation.md'
  requirement = 'The system shall compute the annihilation of a concentration variable towards its equilibrium in the material.'
[]

[ad_mat_reaction_flexible]
  type = 'Exodiff'
  input = 'ad_mat_reaction_flexible_test.i'
  exodiff = 'ad_mat_reaction_flexible_test_out.e'
  issues = '#23'
  design = '/ADMatReactionFlexible.md'
  requirement = 'The system shall compute the reaction contribution in the material.'
[]


[binary_reaction_equal_concentrations]
  type = Exodiff
  input = 'ver-1g.i equal_conc.i'
  exodiff = equal_conc_out.e
  requirement = 'The system shall be able to model a chemical reaction between two species with the same concentrations and calculate the concentrations of reactants and product as a function of time'
[]


[binary_reaction_diff_concentrations_TMAP4]
  type = Exodiff
  input = 'ver-1g.i diff_conc_TMAP4.i'
  exodiff = diff_conc_TMAP4_out.e
  requirement = 'The system shall be able to model a chemical reaction between two species with different concentrations and calculate the concentrations of reactants and product as a function of time using the initial conditions from the TMAP4 case'
[]


[binary_reaction_diff_concentrations_TMAP7]
  type = Exodiff
  input = 'ver-1g.i diff_conc_TMAP7.i'
  exodiff = diff_conc_TMAP7_out.e
  requirement = 'The system shall be able to model a chemical reaction between two species with different concentrations and calculate the concentrations of reactants and product as a function of time using the initial conditions from the TMAP7 case'
[]


[binary_reaction_equal_concentrations_csv_diff]
  type = CSVDiff
  input = 'ver-1g.i equal_conc.i'
  should_execute = False # this test relies on the output files from binary_reaction_equal_concentrations, so it shouldn't be run twice
  csvdiff = equal_conc_out.csv
  requirement = 'The system shall be able to model a chemical reaction between two species with the same concentrations and calculate the concentrations of reactants and product as a function of time, to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time.'
  prereq = binary_reaction_equal_concentrations
[]


[binary_reaction_diff_concentrations_csv_diff_TMAP4]
  type = CSVDiff
  input = 'ver-1g.i diff_conc_TMAP4.i'
  should_execute = False # this test relies on the output files from binary_reaction_diff_concentrations_TMAP4, so it shouldn't be run twice
  csvdiff = diff_conc_TMAP4_out.csv
  requirement = 'The system shall be able to model a chemical reaction between two species with different concentrations using the initial conditions from the TMAP4 case and calculate the concentrations of reactants and product as a function of time to generate CSV data for use in comparisons with the analytic solution over time.'
  prereq = binary_reaction_diff_concentrations_TMAP4
[]


[binary_reaction_diff_concentrations_csv_diff_TMAP7]
  type = CSVDiff
  input = 'ver-1g.i diff_conc_TMAP7.i'
  should_execute = False # this test relies on the output files from binary_reaction_diff_concentrations_TMAP7, so it shouldn't be run twice
  csvdiff = diff_conc_TMAP7_out.csv
  requirement = 'The system shall be able to model a chemical reaction between two species with different concentrations using the initial conditions from the TMAP7 case and calculate the concentrations of reactants and product as a function of time to generate CSV data for use in comparisons with the analytic solution over time.'
  prereq = binary_reaction_diff_concentrations_TMAP7
[]


[ver-1g_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1g.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of a chemical reaction between two species with same or different concentrations, using the initial conditions from both TMAP4 and TMAP7 cases.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[ver-1gc]
  type = Exodiff
  input = 'ver-1gc.i'
  exodiff = ver-1gc_out.e
  requirement = 'The system shall be able to model a series of chemical reactions involving three species and calculate the concentrations of each species as a function of time.'
[]


[ver-1gc_csv]
  type = CSVDiff
  input = 'ver-1gc.i'
  should_execute = False # this test relies on the output files from ver-1gc, so it shouldn't be run twice
  csvdiff = ver-1gc_out.csv
  requirement = 'The system shall be able to model a series of chemical reactions involving three species and calculate the concentrations of each species as a function of time and to generate CSV data for use in comparisons with the analytic solution over time.'
  prereq = ver-1gc
[]


[ver-1gc_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1gc.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of a series of chemical reactions involving three species and calculate the concentrations of each species as a function of time and to generate CSV data for use in comparisons with the analytic solution over time.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1ia_csv]
  type = CSVDiff
  input = 'ver-1ia.i'
  csvdiff = ver-1ia_out.csv
  requirement = 'The system shall be able to model a equilibration problem on a reactive surface with equal starting pressures in ratedep condition and to generate CSV data for use in comparisons with the analytic solution over time.'
[]


[ver-1ia_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1ia.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of a equilibration on a reactive surface with equal starting pressures in ratedep condition'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1ib_csv]
  type = CSVDiff
  input = '../ver-1ia/ver-1ia.i'
  cli_args = 'p0_B2="${units 1e5 Pa}" time_interval="${units 0.05 s}" Outputs/file_base="ver-1ib_out"' # these are the only things that need to be updated from ver-1ia to ver-1ib.
  csvdiff = ver-1ib_out.csv
  requirement = 'The system shall be able to model a equilibration problem on a reactive surface with unequal starting pressures in ratedep condition and to generate CSV data for use in comparisons with the analytic solution over time.'
[]


[ver-1ib_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1ib.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of a equilibration on a reactive surface in ratedep condition with unequal starting pressures.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1ic_csv]
  type = CSVDiff
  input = 'ver-1ic.i'
  csvdiff = ver-1ic_out.csv
  requirement = 'The system shall be able to model a equilibration problem on a reactive surface in surfdep conditions with low barrier energy and to generate CSV data for use in comparisons with the analytic solution over time.'
[]


[ver-1ic_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1ic.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of a equilibration on a reactive surface in surfdep condition with low barrier energy.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1id_csv]
  type = CSVDiff
  input = '../ver-1ic/ver-1ic.i'
  cli_args = "E_x='${units 0.2 eV -> J}' Outputs/file_base='ver-1id_out'" # these are the only things that need to be updated from ver-1ic to ver-1id.
  csvdiff = ver-1id_out.csv
  requirement = 'The system shall be able to model a equilibration problem on a reactive surface in surfdep conditions with high barrier energy and to generate CSV data for use in comparisons with the analytic solution over time.'
[]


[ver-1id_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1id.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of a equilibration on a reactive surface in surfdep condition with high barrier energy.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1ie_csv]
  type = CSVDiff
  input = 'ver-1ie.i'
  csvdiff = ver-1ie_out.csv
  requirement = 'The system shall be able to model a equilibration problem on a reactive surface in lawdep condition with equal starting pressures and to generate CSV data for use in comparisons with the analytic solution over time.'
[]


[ver-1ie_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1ie.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of a equilibration on a reactive surface in lawdep condition with equal starting pressures.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1if_csv]
  type = CSVDiff
  input = '../ver-1ie/ver-1ie.i'
  cli_args = 'p0_B2="${units 1e5 Pa}" Outputs/file_base="ver-1if_out"' # these are the only things that need to be updated from ver-1ie to ver-1if.
  csvdiff = ver-1if_out.csv
  requirement = 'The system shall be able to model a equilibration problem on a reactive surface in lawdep condition with unequal starting pressures and to generate CSV data for use in comparisons with the analytic solution over time.'
[]


[ver-1if_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1if.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of a equilibration on a reactive surface in lawdep condition with unequal starting pressures.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1kc-2_csv]
  type = CSVDiff
  input = ver-1kc-2.i
  cli_args = "simulation_time=0.05
                Executioner/nl_rel_tol=1e-6
                Outputs/file_base=ver-1kc-2_out_k10_light"
  csvdiff = ver-1kc-2_out_k10_light.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface.'
[]


[ver-1kc-2_csv_heavy]
  type = CSVDiff
  heavy = true
  input = ver-1kc-2.i
  csvdiff = ver-1kc-2_out_k10.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface with tight tolerances for higher accuracy.'
[]


[ver-1kc-2_exodus_heavy]
  type = Exodiff
  heavy = true
  input = ver-1kc-2.i
  exodiff = ver-1kc-2_out_k10.e
  prereq = ver-1kc-2_csv_heavy
  should_execute = false # this test relies on the output files from ver-1kc-2_csv_heavy, so it shouldn't be run twice
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and generate an exodus file with tight tolerances for higher accuracy.'
[]


[ver-1kc-2_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1kc-2.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kc-2, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[ver-1kd_csv]
  type = CSVDiff
  input = ver-1kd.i
  cli_args = "simulation_time=0.05
                Executioner/nl_rel_tol=1e-6
                Outputs/exodus=false
                Outputs/file_base=ver-1kd_out_k10_light"
  csvdiff = ver-1kd_out_k10_light.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term.'
[]


[ver-1kd_csv_heavy]
  type = CSVDiff
  heavy = true
  input = ver-1kd.i
  csvdiff = ver-1kd_out_k10.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term with tight tolerances for higher accuracy.'
[]


[ver-1kd_exodus_heavy]
  type = Exodiff
  heavy = true
  input = ver-1kd.i
  exodiff = ver-1kd_out_k10.e
  prereq = ver-1kd_csv_heavy
  should_execute = false # this test relies on the output files from ver-1kd_csv_heavy, so it shouldn't be run twice
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term and generate an exodus file with tight tolerances for higher accuracy.'
[]


[ver-1kd_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1kd.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kd, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law  and a T2 volumetric source term.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[pore_scale_microstructure_formation_slice]
  type = Exodiff
  input = '2D_microstructure_reader_smoothing_base.i pore_structure_closed.params'
  cli_args = "output_name=pore_structure_closed_slice/pore_structure_closed_slice
                num_nodes_x=60
                num_nodes_y=2
                domain_start_x=4000
                domain_end_x=5000
                domain_end_y=1
                Outputs/exodus/execute_on='INITIAL TIMESTEP_END FINAL'"
  exodiff = pore_structure_closed_slice/pore_structure_closed_slice.e
  requirement = 'The system shall be able to read a microstructure image and import it to perform a simulation to smoothen the interfaces.'
  capabilities = 'vtk'
[]


[pore_scale_transport_slice]
  type = Exodiff
  input = '2D_absorption_base.i pore_structure_closed_absorption.params'
  cli_args = "input_name=gold/pore_structure_closed_slice/pore_structure_closed_slice.e
                output_name=pore_structure_closed_slice/pore_structure_closed_absorption_slice
                BCs/tritium_2g_sides_d/boundary=right
                Executioner/num_steps=20"
  exodiff = pore_structure_closed_slice/pore_structure_closed_absorption_slice.e
  custom_cmp = '2D_absorption_closed_slice.exodiff' # neeeded for -p2 tests
  requirement = 'The system shall be able to import an existing microstructure and perform a simulation of tritium transport during
                   absorption at the pore scale.'
[]


[val-2a_csvdiff]
  type = CSVDiff
  input = 'val-2a.i'
  csvdiff = val-2a_out.csv
  requirement = 'The system shall be able to model deuterium ion implantation in a steel alloy for comparison with experimental results, particularly focusing on the permeation flux.'
[]


[val-2a_exodiff]
  type = Exodiff
  input = 'val-2a.i'
  exodiff = val-2a_out.e
  prereq = val-2a_csvdiff
  should_execute = false # this test relies on the output files from val-2a_csvdiff, so it shouldn't be run twice
  requirement = 'The system shall be able to model deuterium ion implantation in a steel alloy for comparison with experimental results, focused on the full set of simulation output including deuterium concentration, recombination coefficient, and dissociation coefficient.'
[]


[val-2a_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2a.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of validation case 2a, modeling deuterium ion implantation in a steel alloy.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[val-2ea_csvdiff]
  type = CSVDiff
  input = val-2ea.i
  csvdiff = val-2ea_out.csv
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.05 mm thick membrane at 825 K to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2ea]
  type = Exodiff
  input = val-2ea.i
  prereq = val-2ea_csvdiff
  should_execute = False # this test relies on the output files from val-2ea_csvdiff, so it shouldn't be run twice
  exodiff = val-2ea_out.e
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.05 mm thick membrane at 825 K.'
[]


[val-2eb_csvdiff]
  type = CSVDiff
  input = val-2ea.i
  csvdiff = val-2eb_out.csv
  cli_args = 'slab_thickness="${units 2.5e-5 m -> mum}" file_name="val-2eb_out"'
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 825 K to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2eb]
  type = Exodiff
  input = val-2ea.i
  prereq = val-2eb_csvdiff
  should_execute = False # this test relies on the output files from val-2eb_csvdiff, so it shouldn't be run twice
  exodiff = val-2eb_out.e
  cli_args = 'slab_thickness="${units 2.5e-5 m -> mum}" file_name="val-2eb_out"'
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 825 K.'
[]


[val-2ec_csvdiff]
  type = CSVDiff
  input = val-2ea.i
  csvdiff = val-2ec_out.csv
  cli_args = 'temperature="${units 865 K}" slab_thickness="${units 2.5e-5 m -> mum}" file_name="val-2ec_out"'
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 865 K to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2ec]
  type = Exodiff
  input = val-2ea.i
  prereq = val-2ec_csvdiff
  should_execute = False # this test relies on the output files from val-2ec_csvdiff, so it shouldn't be run twice
  exodiff = val-2ec_out.e
  cli_args = 'temperature="${units 865 K}" slab_thickness="${units 2.5e-5 m -> mum}" file_name="val-2ec_out"'
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 865 K and generate an exodus file.'
[]


[val-2ed_csvdiff]
  type = CSVDiff
  input = val-2ed.i
  csvdiff = val-2ed_out.csv
  requirement = 'The system shall be able to model permeation of mixture gas from a 0.025 mm thin membrane at 870 K using lawdep boundary conditions to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2ed]
  type = Exodiff
  input = val-2ed.i
  prereq = val-2ed_csvdiff
  should_execute = False # this test relies on the output files from val-2ed_csvdiff, so it shouldn't be run twice
  exodiff = val-2ed_out.e
  requirement = 'The system shall be able to model permeation of mixture gas with chemical reaction from a  0.025 mm thin membrane at 870 K using lawdep boundary conditions and generate an exodus file.'
[]


[val-2ee_csvdiff]
  type = CSVDiff
  input = val-2ee.i
  csvdiff = val-2ee_out.csv
  requirement = 'The system shall be able to model permeation of mixture gas from a 0.025 mm thin membrane at 870 K using ratedep boundary conditions to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2ee]
  type = Exodiff
  input = val-2ee.i
  prereq = val-2ee_csvdiff
  should_execute = False # this test relies on the output files from val-2ee_csvdiff, so it shouldn't be run twice
  exodiff = val-2ee_out.e
  requirement = 'The system shall be able to model permeation of mixture gas with chemical reaction from a 0.025 mm thin membrane at 870 K using ratedep boundary conditions and generate an exodus file.'
[]


[ver-2e_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2e.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and experimental data of validation case 2e, modeling the permeation of Deuterium from a membrane.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[val-2f_light_csv]
  type = CSVDiff
  input = val-2f.i
  cli_args = "sample_thickness='${units 0.9e-4 m -> mum}'
                ix1=8 ix2=8 ix3=8 ix4=8 ix5=8
                dt_init=2e-3
                charge_time='${units 1e-1 s}' cooldown_duration='${units 1e-1 s}'
                Executioner/TimeStepper/timestep_limiting_postprocessor=max_time_step_size_coarse
                Outputs/csv/file_base=val-2f_light_out
                Outputs/exodus/file_base=val-2f_light_out
                Outputs/csv/start_time=0.2
                Executioner/TimeStepper/growth_factor=1.05
                Executioner/scheme=implicit-euler"
  csvdiff = val-2f_light_out.csv
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport and generate CSV data output with a short runtime and coarse mesh testing.'
  rel_err = 1e-3
  override_columns = 'scaled_flux_surface_right scaled_flux_surface_left scaled_mobile_deuterium'
  override_abs_zero = '1e4                      1e6                      1e7'
  override_rel_err = '1e-3                      1e-3                     1e-3'
  # Some relevant scales when considering diffs
  #
  # scaled_flux_surface_right          O(1e12)
  # scaled_flux_surface_left           O(1e19)
  # scaled_mobile_deuterium            O(1e13)
  # scaled_trapped_deuterium_intrinsic O(1e14)
[]


[val-2f_light_exodus]
  type = Exodiff
  input = val-2f.i
  exodiff = val-2f_light_out.e
  prereq = val-2f_light_csv
  should_execute = false # this test relies on the output files from val-2f_light_csv, so it shouldn't be run twice
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport with a short runtime and coarse mesh testing.'
  rel_err = 1e-3
  abs_zero = 1e-5
[]


[val-2f_heavy_csv_implicit-euler]
  type = CSVDiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/exodus/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/exodus/time_step_interval=400
                Outputs/csv/file_base=val-2f_heavy_desorption_out
                Outputs/exodus/file_base=val-2f_heavy_desorption_out
                Outputs/csv_temperature_history/file_base=val-2f_temperature_implicit_euler_out
                Executioner/scheme=implicit-euler"
  csvdiff = val-2f_heavy_desorption_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output. Only desorption phase data is compared with every other timestep.'
  max_time = 2000
[]


[val-2f_heavy_exodus_implicit-euler]
  type = Exodiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/exodus/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/exodus/time_step_interval=400
                Outputs/csv/file_base=val-2f_heavy_desorption_out
                Outputs/exodus/file_base=val-2f_heavy_desorption_out
                Outputs/csv_temperature_history/file_base=val-2f_temperature_implicit_euler_out
                Executioner/scheme=implicit-euler"
  exodiff = val-2f_heavy_desorption_out.e
  heavy = true
  prereq = val-2f_heavy_csv_implicit-euler
  should_execute = false # this test relies on the output files from val-2f_heavy_csv_implicit-euler, so it shouldn't be run twice
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability. Only desorption phase data is compared with every other timestep.'
[]


[val-2f_heavy_temperature_csv_implicit-euler]
  type = CSVDiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/exodus/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/exodus/time_step_interval=400
                Outputs/csv_temperature_history/file_base=val-2f_temperature_implicit_euler_out
                Executioner/scheme=implicit-euler"
  prereq = val-2f_heavy_csv_implicit-euler
  should_execute = false # this test relies on the output files from val-2f_heavy_csv_implicit-euler, so it shouldn't be run twice
  csvdiff = val-2f_temperature_implicit_euler_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output about the temperature for documentation plots.'
  max_time = 2000
[]


[val-2f_heavy_csv_inf_recombination_implicit-euler]
  type = CSVDiff
  input = val-2f.i
  cli_args = "ix1='${fparse 500}' ix4='${fparse 500}'
                AuxVariables/active='bounds_dummy temperature'
                BCs/active='left_concentration_sieverts right_concentration_sieverts'
                Physics/SpeciesTrapping/trapping_1/Ct0='trap_distribution_function_1_inf'
                Physics/SpeciesTrapping/trapping_2/Ct0='trap_distribution_function_2_inf'
                Physics/SpeciesTrapping/trapping_3/Ct0='trap_distribution_function_3_inf'
                Physics/SpeciesTrapping/trapping_4/Ct0='trap_distribution_function_4_inf'
                Physics/SpeciesTrapping/trapping_5/Ct0='trap_distribution_function_5_inf'
                Materials/active='diffusivity_W_func diffusivity_nonAD'
                Postprocessors/active='integral_source_deuterium scaled_implanted_deuterium integral_deuterium_concentration scaled_mobile_deuterium flux_surface_left_sieverts scaled_flux_surface_left_sieverts flux_surface_right_sieverts scaled_flux_surface_right_sieverts temperature_pps max_time_step_size max_time_step_size_coarse integral_trapped_concentration_1 scaled_trapped_deuterium_1 integral_trapped_concentration_2 scaled_trapped_deuterium_2 integral_trapped_concentration_3 scaled_trapped_deuterium_3 integral_trapped_concentration_4 scaled_trapped_deuterium_4 integral_trapped_concentration_5 scaled_trapped_deuterium_5 integral_trapped_concentration_intrinsic scaled_trapped_deuterium_intrinsic'
                Postprocessors/max_time_step_size/function=max_dt_size_function_inf
                Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/csv/file_base=val-2f_heavy_desorption_inf_recombination_out
                Outputs/exodus/file_base=val-2f_heavy_desorption_inf_recombination_out
                Executioner/abort_on_solve_fail=false
                Executioner/nl_abs_tol=5e-4
                Executioner/scheme=implicit-euler"
  csvdiff = val-2f_heavy_desorption_inf_recombination_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output, for the infinite recombination case. Only desorption phase data is compared with every other timestep.'
  max_time = 3600
[]


[val-2f_heavy_csv_bdf2]
  type = CSVDiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/sync_times='${fparse charge_time_hat + cooldown_duration_hat}'"
  csvdiff = val-2f_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output.'
  max_time = 2000
  rel_err = 1e-4
  override_columns = 'scaled_flux_surface_right scaled_flux_surface_left scaled_mobile_deuterium scaled_trapped_deuterium_1 scaled_trapped_deuterium_2'
  override_abs_zero = '1e4                      1e6                      1e4                     1e9                        1e4'
  override_rel_err = '5e-3                      1e-3                     9e-3                    5e-3                       5e-3'
[]


[val-2f_heavy_csv_inf_recombination_bdf2]
  type = CSVDiff
  input = val-2f.i
  cli_args = "ix1='${fparse 500}' ix4='${fparse 500}'
                AuxVariables/active='bounds_dummy temperature'
                BCs/active='left_concentration_sieverts right_concentration_sieverts'
                Physics/SpeciesTrapping/trapping_1/Ct0='trap_distribution_function_1_inf'
                Physics/SpeciesTrapping/trapping_2/Ct0='trap_distribution_function_2_inf'
                Physics/SpeciesTrapping/trapping_3/Ct0='trap_distribution_function_3_inf'
                Physics/SpeciesTrapping/trapping_4/Ct0='trap_distribution_function_4_inf'
                Physics/SpeciesTrapping/trapping_5/Ct0='trap_distribution_function_5_inf'
                Materials/active='diffusivity_W_func diffusivity_nonAD'
                Postprocessors/active='integral_source_deuterium scaled_implanted_deuterium integral_deuterium_concentration scaled_mobile_deuterium flux_surface_left_sieverts scaled_flux_surface_left_sieverts flux_surface_right_sieverts scaled_flux_surface_right_sieverts temperature_pps diffusion_W_hat diffusion_W max_time_step_size max_time_step_size_coarse integral_trapped_concentration_1 scaled_trapped_deuterium_1 integral_trapped_concentration_2 scaled_trapped_deuterium_2 integral_trapped_concentration_3 scaled_trapped_deuterium_3 integral_trapped_concentration_4 scaled_trapped_deuterium_4 integral_trapped_concentration_5 scaled_trapped_deuterium_5 integral_trapped_concentration_intrinsic scaled_trapped_deuterium_intrinsic spatial_max_mobile_d2 spatial_max_trapped_1 spatial_max_trapped_2 spatial_max_trapped_3 spatial_max_trapped_4 spatial_max_trapped_5 spatial_max_trapped_intrinsic max_mobile_d2 max_trapped_1 max_trapped_2 max_trapped_3 max_trapped_4 max_trapped_5 max_trapped_intrinsic max_scaled_flux_surface_left_sieverts max_scaled_flux_surface_right_sieverts max_scaled_mobile_deuterium max_scaled_trapped_deuterium_intrinsic'
                Postprocessors/max_time_step_size/function=max_dt_size_function_inf
                Outputs/csv/file_base='val-2f_out_inf_recombination'
                Outputs/exodus/file_base='val-2f_out_inf_recombination'
                Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/sync_times='${fparse charge_time_hat + cooldown_duration_hat}'
                Executioner/abort_on_solve_fail=false
                Executioner/nl_abs_tol=5e-4"
  csvdiff = val-2f_out_inf_recombination.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output, for the infinite recombination case.'
  max_time = 3600
  rel_err = 1e-5
  abs_zero = 1e4
  override_columns = 'scaled_flux_surface_right_sieverts scaled_flux_surface_left_sieverts scaled_mobile_deuterium scaled_trapped_deuterium_1 scaled_trapped_deuterium_2 scaled_trapped_deuterium_3 scaled_trapped_deuterium_4 scaled_trapped_deuterium_5'
  override_abs_zero = '1e6                               1e9                               1e6                     1e9                        1e9                        1e9                        1e9                        1e10'
  override_rel_err = '1e-3                               3e-3                              5e-3                    1e-3                       1e-3                       3e-3                       1e-3                       5e-5'
[]


[val-2f_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2f.py'
  requirement = 'The system shall be able to generate comparison plots between simulated solutions and experimental data of validation case val-2f, modeling self-damaged tungsten effects on deuterium transport.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[val-2k_natural_oxide_implicit_euler_csvdiff_light]
  type = CSVDiff
  input = val-2k_natural_oxide.i
  cli_args = 'Mesh/active=mesh_coarse
                end_time=4000
                Executioner/nl_rel_tol=1e-4
                Executioner/scheme=implicit-euler
                Executioner/TimeStepper/growth_factor=2
                output_file_base=val-2k_natural_oxide_implicit_euler_light_out'
  csvdiff = val-2k_natural_oxide_implicit_euler_light_out.csv
  requirement = 'The system shall be able to model deuterium transport in self-irradiated tungsten with a 1 nm natural-oxide oxygen-field representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the implicit Euler time integration scheme.'
[]


[val-2k_natural_oxide_implicit_euler_exodiff_light]
  type = Exodiff
  input = val-2k_natural_oxide.i
  exodiff = val-2k_natural_oxide_implicit_euler_light_out.e
  custom_cmp = 'val-2k_natural_oxide_implicit_euler_light_exodus.exodiff'
  prereq = val-2k_natural_oxide_implicit_euler_csvdiff_light
  should_execute = false
  requirement = 'The system shall be able to produce the full field solution of a simulation of deuterium transport in self-irradiated tungsten with a 1 nm natural-oxide oxygen-field representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the implicit Euler time integration scheme.'
[]


[val-2k_natural_oxide_bdf2_csvdiff]
  type = CSVDiff
  input = val-2k_natural_oxide.i
  cli_args = 'output_file_base=val-2k_natural_oxide_out'
  csvdiff = val-2k_natural_oxide_out.csv
  # oxygen_mass_conservation_residual's magnitude is 1e17
  override_columns = 'oxygen_mass_conservation_residual'
  override_abs_zero = '1e12'
  override_rel_err = '1e-3'
  heavy = true
  requirement = 'The system shall be able to model deuterium transport in self-irradiated tungsten with a 1 nm natural-oxide oxygen-field representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the backwards differencing formula of second order (BDF-2) time integration scheme.'
[]


[val-2k_5nm_oxide_bdf2_csvdiff]
  type = CSVDiff
  input = val-2k_5nm_oxide.i
  csvdiff = val-2k_5nm_oxide_out.csv
  rel_err = 1e-5
  # oxygen_mass_conservation_residual's magnitude is 1e17
  override_columns = 'oxygen_mass_conservation_residual'
  override_abs_zero = '1e12'
  override_rel_err = '1e-3'
  heavy = true
  requirement = 'The system shall be able to model deuterium transport in self-irradiated tungsten with a 5 nm oxygen-field oxide representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the backwards differencing formula of second order (BDF-2) time integration scheme.'
[]


[val-2k_10nm_oxide_bdf2_csvdiff]
  type = CSVDiff
  input = val-2k_10nm_oxide.i
  csvdiff = val-2k_10nm_oxide_out.csv
  rel_err = 1e-5
  # oxygen_mass_conservation_residual's magnitude is 1e17
  override_columns = 'oxygen_mass_conservation_residual'
  override_abs_zero = '1e13'
  override_rel_err = '5e-3'
  heavy = true
  requirement = 'The system shall be able to model deuterium transport in self-irradiated tungsten with a 10 nm oxygen-field oxide representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the backwards differencing formula of second order (BDF-2) time integration scheme.'
[]


[val-2k_15nm_oxide_bdf2_csvdiff]
  type = CSVDiff
  input = val-2k_15nm_oxide.i
  csvdiff = val-2k_15nm_oxide_out.csv
  heavy = true
  requirement = 'The system shall be able to model deuterium transport in self-irradiated tungsten with a 15 nm oxygen-field oxide representation during a TDS experiment using deuterium diffusion, trapping, oxygen transport, and phenomenological D2 and D2O surface release, using the backwards differencing formula of second order (BDF-2) time integration scheme.'
[]


[val-2k_15nm_oxide_initial_profile_csvdiff]
  type = CSVDiff
  input = val-2k_15nm_oxide.i
  csvdiff = val-2k_15nm_oxide_profile_initial_out_line_profile_0000.csv
  prereq = val-2k_15nm_oxide_bdf2_csvdiff
  should_execute = false
  heavy = true
  requirement = 'The system shall be able to output the initial deuterium and oxygen concentration profiles for the 15 nm oxygen-field oxide companion case in val-2k, including the mobile and trapped deuterium populations used to initialize the plotted sectioned profile.'
[]


[val-2k_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2k.py'
  requirement = 'The system shall be able to generate comparison plots for the val-2k validation, comparing the natural-oxide, 5 nm, 10 nm, and 15 nm oxygen-field oxide D2 and D2O release cases against the corresponding experimental data when the matching simulation outputs are available.'
  required_python_packages = 'matplotlib numpy pandas os re tempfile'
[]


[val-2c_immediate_injection_csv_implicit-euler]
  type = CSVDiff
  input = val-2c_immediate_injection.i
  cli_args = 'Executioner/scheme=implicit-euler Outputs/exodus=true Outputs/file_base=val-2c_immediate_injection_ie_out'
  csvdiff = val-2c_immediate_injection_ie_out.csv
  requirement = 'The system shall be able to model the Test Cell Release Experiment (val-2c) with immediate T2 injection.'
  rel_err = 3e-5
[]


[val-2c_immediate_injection_exodus_implicit-euler]
  type = Exodiff
  input = val-2c_immediate_injection.i
  cli_args = 'Executioner/scheme=implicit-euler Outputs/exodus=true Outputs/file_base=val-2c_immediate_injection_ie_out'
  prereq = val-2c_immediate_injection_csv_implicit-euler
  should_execute = false # this test relies on the output files from val-2c_immediate_injection_csv, so it shouldn't be run twice
  exodiff = val-2c_immediate_injection_ie_out.e
  custom_cmp = 'val-2c_exodus.exodiff'
  requirement = 'The system shall be able to model the Test Cell Release Experiment (val-2c) with immediate T2 injection and properly compute the exodus file.'
[]


[val-2c_delay_csv_implicit-euler]
  type = CSVDiff
  input = val-2c_delay.i
  cli_args = 'Executioner/scheme=implicit-euler Outputs/exodus=true Outputs/file_base=val-2c_delay_ie_out'
  csvdiff = val-2c_delay_ie_out.csv
  requirement = 'The system shall be able to model the Test Cell Release Experiment (val-2c) with delayed T2 injection.'
  abs_zero = 1e-8
  rel_err = 3e-5
[]


[val-2c_delay_exodus_implicit-euler]
  type = Exodiff
  input = val-2c_delay.i
  cli_args = 'Executioner/scheme=implicit-euler Outputs/exodus=true Outputs/file_base=val-2c_delay_ie_out'
  prereq = val-2c_delay_csv_implicit-euler
  should_execute = false # this test relies on the output files from val-2c_delay_csv, so it shouldn't be run twice
  exodiff = val-2c_delay_ie_out.e
  custom_cmp = 'val-2c_exodus.exodiff'
  requirement = 'The system shall be able to model the Test Cell Release Experiment (val-2c) with delayed T2 injection and properly compute the exodus file.'
[]


[val-2c_delay_calibrated_csv_implicit-euler]
  type = CSVDiff
  input = 'val-2c_delay.i'
  # the parameter values below are from gold/calibrated_parameter_values.txt
  cli_args = 'reaction_rate=2.8331901331213944e-11
                diffusivity_elemental_tritium=3.8640662435310973
                diffusivity_tritiated_water=0.017373835349450507
                log_solubility_elemental_tritium=-3.683352919815223
                log_solubility_tritiated_water=6.8938628913078555
                time_injection_T2_end=9536.239653312441
                Executioner/scheme=implicit-euler
                Outputs/file_base=val-2c_delay_calibrated_ie_out'
  csvdiff = val-2c_delay_calibrated_ie_out.csv
  requirement = 'The system shall be able to model the Test Cell Release Experiment (val-2c) with delayed T2 injection using calibrated model parameters.'
  abs_zero = 1e-8
  rel_err = 3e-5
  issues = '#266'
[]


[val-2c_delay_pss_study_csv]
  type = JSONDiff
  input = val-2c_pss_main.i
  cli_args = 'num_samplessub=2
                num_subsets=1
                Samplers/sample/num_parallel_chains=1
                subset_probability=0.5
                Samplers/sample/seed=1518
                file_base_output=val-2c_pss_results_short/val-2c_pss_main_short_out'
  jsondiff = val-2c_pss_results_short/val-2c_pss_main_short_out.json
  requirement = 'The system shall be able to perform a Parallel Subset Simulation study using a model of the Test Cell Release Experiment (val-2c) with delayed T2 injection.'
  abs_zero = 1e-8
  rel_err = 1e-5
  recover = false # moose#24460 and moose#32193 and #192
  issues = '#266'
  skip_keys = 'number_of_parts part'
[]


[val-2c_delay_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2c.py'
  requirement = 'The system shall be able to generate comparison plots between simulated solutions and experimental data of validation cases val-2c, modeling a Test Cell Release Experiment.'
  required_python_packages = 'matplotlib numpy pandas scipy os json'
[]


[val-2c_immediate_injection_csv_bdf2]
  type = CSVDiff
  input = val-2c_immediate_injection.i
  csvdiff = val-2c_immediate_injection_csv.csv
  requirement = 'The system shall be able to model the Test Cell Release Experiment (val-2c) with immediate T2 injection to generate output data for documentation.'
  rel_err = 3e-5
[]


[val-2c_delay_csv_bdf2]
  type = CSVDiff
  input = val-2c_delay.i
  csvdiff = val-2c_delay_csv.csv
  requirement = 'The system shall be able to model the Test Cell Release Experiment (val-2c) with delayed T2 injection to generate output data for documentation.'
  abs_zero = 2e-4
  rel_err = 5e-5
[]


[val-2c_delay_calibrated_csv_bdf2]
  type = CSVDiff
  input = 'val-2c_delay.i'
  csvdiff = val-2c_delay_calibrated_out.csv
  # the parameter values below are from gold/calibrated_parameter_values.txt
  cli_args = 'reaction_rate=2.8331901331213944e-11
                diffusivity_elemental_tritium=3.8640662435310973
                diffusivity_tritiated_water=0.017373835349450507
                log_solubility_elemental_tritium=-3.683352919815223
                log_solubility_tritiated_water=6.8938628913078555
                time_injection_T2_end=9536.239653312441
                Outputs/file_base=val-2c_delay_calibrated_out'
  requirement = 'The system shall be able to model the Test Cell Release Experiment (val-2c) with delayed T2 injection using calibrated model parameters to generate output data for documentation.'
  abs_zero = 2e-4
  rel_err = 5e-5
[]


[val-2d_csvdiff]
  type = CSVDiff
  input = 'val-2d.i'
  cli_args = 'Mesh/active=cartesian_mesh_coarse Postprocessors/max_time_step_size/function=max_dt_size_function_coarse Executioner/nl_rel_tol=8e-9 Outputs/file_base=val-2d_limited_out'
  csvdiff = val-2d_limited_out.csv
  requirement = 'The system shall be able to model thermal desorption spectroscopy on Tungsten.'
[]


[val-2d_exodiff]
  type = Exodiff
  input = 'val-2d.i'
  cli_args = 'Mesh/active=cartesian_mesh_coarse Postprocessors/max_time_step_size/function=max_dt_size_function_coarse Executioner/nl_rel_tol=8e-9 Outputs/file_base=val-2d_limited_out'
  exodiff = val-2d_limited_out.e
  prereq = val-2d_csvdiff
  should_execute = false # this test relies on the output files from val-2d_csvdiff, so it shouldn't be run twice
  requirement = 'The system shall be able to model thermal desorption spectroscopy on Tungsten to include full set of simulation outputs, including tritium concentration, diffusion flux, and trapping properties.'
[]


[val-2d_heavy_csvdiff]
  type = CSVDiff
  input = 'val-2d.i'
  csvdiff = val-2d_out.csv
  heavy = true
  requirement = 'The system shall be able to model thermal desorption spectroscopy on Tungsten with fine mesh and time step to compare with the desorption flux from experiment results.'
[]


[val-2d_heavy_exodiff]
  type = Exodiff
  input = 'val-2d.i'
  exodiff = val-2d_out.e
  prereq = val-2d_csvdiff
  heavy = true
  should_execute = false # this test relies on the output files from val-2d_csvdiff, so it shouldn't be run twice
  requirement = 'The system shall be able to model thermal desorption spectroscopy on Tungsten with fine mesh and time step to include full set of simulation outputs, including tritium concentration, diffusion flux, and trapping properties.'
[]


[val-2d_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2d.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of validation case 2d, modeling thermal desorption spectroscopy on Tungsten.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[val-2f_light_csv]
  type = CSVDiff
  input = val-2f.i
  cli_args = "sample_thickness='${units 0.9e-4 m -> mum}'
                ix1=8 ix2=8 ix3=8 ix4=8 ix5=8
                dt_init=2e-3
                charge_time='${units 1e-1 s}' cooldown_duration='${units 1e-1 s}'
                Executioner/TimeStepper/timestep_limiting_postprocessor=max_time_step_size_coarse
                Outputs/csv/file_base=val-2f_light_out
                Outputs/exodus/file_base=val-2f_light_out
                Outputs/csv/start_time=0.2
                Executioner/TimeStepper/growth_factor=1.05
                Executioner/scheme=implicit-euler"
  csvdiff = val-2f_light_out.csv
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport and generate CSV data output with a short runtime and coarse mesh testing.'
  rel_err = 1e-3
  override_columns = 'scaled_flux_surface_right scaled_flux_surface_left scaled_mobile_deuterium'
  override_abs_zero = '1e4                      1e6                      1e7'
  override_rel_err = '1e-3                      1e-3                     1e-3'
  # Some relevant scales when considering diffs
  #
  # scaled_flux_surface_right          O(1e12)
  # scaled_flux_surface_left           O(1e19)
  # scaled_mobile_deuterium            O(1e13)
  # scaled_trapped_deuterium_intrinsic O(1e14)
[]


[val-2f_light_exodus]
  type = Exodiff
  input = val-2f.i
  exodiff = val-2f_light_out.e
  prereq = val-2f_light_csv
  should_execute = false # this test relies on the output files from val-2f_light_csv, so it shouldn't be run twice
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport with a short runtime and coarse mesh testing.'
  rel_err = 1e-3
  abs_zero = 1e-5
[]


[val-2f_heavy_csv_implicit-euler]
  type = CSVDiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/exodus/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/exodus/time_step_interval=400
                Outputs/csv/file_base=val-2f_heavy_desorption_out
                Outputs/exodus/file_base=val-2f_heavy_desorption_out
                Outputs/csv_temperature_history/file_base=val-2f_temperature_implicit_euler_out
                Executioner/scheme=implicit-euler"
  csvdiff = val-2f_heavy_desorption_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output. Only desorption phase data is compared with every other timestep.'
  max_time = 2000
[]


[val-2f_heavy_exodus_implicit-euler]
  type = Exodiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/exodus/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/exodus/time_step_interval=400
                Outputs/csv/file_base=val-2f_heavy_desorption_out
                Outputs/exodus/file_base=val-2f_heavy_desorption_out
                Outputs/csv_temperature_history/file_base=val-2f_temperature_implicit_euler_out
                Executioner/scheme=implicit-euler"
  exodiff = val-2f_heavy_desorption_out.e
  heavy = true
  prereq = val-2f_heavy_csv_implicit-euler
  should_execute = false # this test relies on the output files from val-2f_heavy_csv_implicit-euler, so it shouldn't be run twice
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability. Only desorption phase data is compared with every other timestep.'
[]


[val-2f_heavy_temperature_csv_implicit-euler]
  type = CSVDiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/exodus/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/exodus/time_step_interval=400
                Outputs/csv_temperature_history/file_base=val-2f_temperature_implicit_euler_out
                Executioner/scheme=implicit-euler"
  prereq = val-2f_heavy_csv_implicit-euler
  should_execute = false # this test relies on the output files from val-2f_heavy_csv_implicit-euler, so it shouldn't be run twice
  csvdiff = val-2f_temperature_implicit_euler_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output about the temperature for documentation plots.'
  max_time = 2000
[]


[val-2f_heavy_csv_inf_recombination_implicit-euler]
  type = CSVDiff
  input = val-2f.i
  cli_args = "ix1='${fparse 500}' ix4='${fparse 500}'
                AuxVariables/active='bounds_dummy temperature'
                BCs/active='left_concentration_sieverts right_concentration_sieverts'
                Physics/SpeciesTrapping/trapping_1/Ct0='trap_distribution_function_1_inf'
                Physics/SpeciesTrapping/trapping_2/Ct0='trap_distribution_function_2_inf'
                Physics/SpeciesTrapping/trapping_3/Ct0='trap_distribution_function_3_inf'
                Physics/SpeciesTrapping/trapping_4/Ct0='trap_distribution_function_4_inf'
                Physics/SpeciesTrapping/trapping_5/Ct0='trap_distribution_function_5_inf'
                Materials/active='diffusivity_W_func diffusivity_nonAD'
                Postprocessors/active='integral_source_deuterium scaled_implanted_deuterium integral_deuterium_concentration scaled_mobile_deuterium flux_surface_left_sieverts scaled_flux_surface_left_sieverts flux_surface_right_sieverts scaled_flux_surface_right_sieverts temperature_pps max_time_step_size max_time_step_size_coarse integral_trapped_concentration_1 scaled_trapped_deuterium_1 integral_trapped_concentration_2 scaled_trapped_deuterium_2 integral_trapped_concentration_3 scaled_trapped_deuterium_3 integral_trapped_concentration_4 scaled_trapped_deuterium_4 integral_trapped_concentration_5 scaled_trapped_deuterium_5 integral_trapped_concentration_intrinsic scaled_trapped_deuterium_intrinsic'
                Postprocessors/max_time_step_size/function=max_dt_size_function_inf
                Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/csv/file_base=val-2f_heavy_desorption_inf_recombination_out
                Outputs/exodus/file_base=val-2f_heavy_desorption_inf_recombination_out
                Executioner/abort_on_solve_fail=false
                Executioner/nl_abs_tol=5e-4
                Executioner/scheme=implicit-euler"
  csvdiff = val-2f_heavy_desorption_inf_recombination_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output, for the infinite recombination case. Only desorption phase data is compared with every other timestep.'
  max_time = 3600
[]


[val-2f_heavy_csv_bdf2]
  type = CSVDiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/sync_times='${fparse charge_time_hat + cooldown_duration_hat}'"
  csvdiff = val-2f_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output.'
  max_time = 2000
  rel_err = 1e-4
  override_columns = 'scaled_flux_surface_right scaled_flux_surface_left scaled_mobile_deuterium scaled_trapped_deuterium_1 scaled_trapped_deuterium_2'
  override_abs_zero = '1e4                      1e6                      1e4                     1e9                        1e4'
  override_rel_err = '5e-3                      1e-3                     9e-3                    5e-3                       5e-3'
[]


[val-2f_heavy_csv_inf_recombination_bdf2]
  type = CSVDiff
  input = val-2f.i
  cli_args = "ix1='${fparse 500}' ix4='${fparse 500}'
                AuxVariables/active='bounds_dummy temperature'
                BCs/active='left_concentration_sieverts right_concentration_sieverts'
                Physics/SpeciesTrapping/trapping_1/Ct0='trap_distribution_function_1_inf'
                Physics/SpeciesTrapping/trapping_2/Ct0='trap_distribution_function_2_inf'
                Physics/SpeciesTrapping/trapping_3/Ct0='trap_distribution_function_3_inf'
                Physics/SpeciesTrapping/trapping_4/Ct0='trap_distribution_function_4_inf'
                Physics/SpeciesTrapping/trapping_5/Ct0='trap_distribution_function_5_inf'
                Materials/active='diffusivity_W_func diffusivity_nonAD'
                Postprocessors/active='integral_source_deuterium scaled_implanted_deuterium integral_deuterium_concentration scaled_mobile_deuterium flux_surface_left_sieverts scaled_flux_surface_left_sieverts flux_surface_right_sieverts scaled_flux_surface_right_sieverts temperature_pps diffusion_W_hat diffusion_W max_time_step_size max_time_step_size_coarse integral_trapped_concentration_1 scaled_trapped_deuterium_1 integral_trapped_concentration_2 scaled_trapped_deuterium_2 integral_trapped_concentration_3 scaled_trapped_deuterium_3 integral_trapped_concentration_4 scaled_trapped_deuterium_4 integral_trapped_concentration_5 scaled_trapped_deuterium_5 integral_trapped_concentration_intrinsic scaled_trapped_deuterium_intrinsic spatial_max_mobile_d2 spatial_max_trapped_1 spatial_max_trapped_2 spatial_max_trapped_3 spatial_max_trapped_4 spatial_max_trapped_5 spatial_max_trapped_intrinsic max_mobile_d2 max_trapped_1 max_trapped_2 max_trapped_3 max_trapped_4 max_trapped_5 max_trapped_intrinsic max_scaled_flux_surface_left_sieverts max_scaled_flux_surface_right_sieverts max_scaled_mobile_deuterium max_scaled_trapped_deuterium_intrinsic'
                Postprocessors/max_time_step_size/function=max_dt_size_function_inf
                Outputs/csv/file_base='val-2f_out_inf_recombination'
                Outputs/exodus/file_base='val-2f_out_inf_recombination'
                Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/sync_times='${fparse charge_time_hat + cooldown_duration_hat}'
                Executioner/abort_on_solve_fail=false
                Executioner/nl_abs_tol=5e-4"
  csvdiff = val-2f_out_inf_recombination.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output, for the infinite recombination case.'
  max_time = 3600
  rel_err = 1e-5
  abs_zero = 1e4
  override_columns = 'scaled_flux_surface_right_sieverts scaled_flux_surface_left_sieverts scaled_mobile_deuterium scaled_trapped_deuterium_1 scaled_trapped_deuterium_2 scaled_trapped_deuterium_3 scaled_trapped_deuterium_4 scaled_trapped_deuterium_5'
  override_abs_zero = '1e6                               1e9                               1e6                     1e9                        1e9                        1e9                        1e9                        1e10'
  override_rel_err = '1e-3                               3e-3                              5e-3                    1e-3                       1e-3                       3e-3                       1e-3                       5e-5'
[]


[val-2f_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2f.py'
  requirement = 'The system shall be able to generate comparison plots between simulated solutions and experimental data of validation case val-2f, modeling self-damaged tungsten effects on deuterium transport.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[val-2g_trapping_initial_light_csv]
  type = CSVDiff
  input = 'val-2g_trapping_light.i'
  cli_args = "Outputs/file_base=val-2g_trapping_initial_light_out"
  csvdiff = val-2g_trapping_initial_light_out.csv
  requirement = 'The system shall be able to model deuterium transport in proton-conducting ceramics with trapping effects to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2g_trapping_initial_light_exodus]
  type = Exodiff
  input = 'val-2g_trapping_light.i'
  cli_args = "Outputs/file_base=val-2g_trapping_initial_light_out"
  exodiff = val-2g_trapping_initial_light_out.e
  prereq = val-2g_trapping_initial_light_csv
  should_execute = false # this test relies on the output files from val-2g_trapping_initial_light_csv, so it shouldn't be run twice
  requirement = 'The system shall be able to model deuterium transport in proton-conducting ceramics with trapping effects.'
[]


[val-2g_no_trapping_initial_csv]
  type = CSVDiff
  input = 'parameters_no_trapping_initial_validation.params val-2g_trapping.i'
  cli_args = "trapping_site_fraction_1=0 Outputs/file_base=val-2g_no_trapping_initial_parameters"
  csvdiff = val-2g_no_trapping_initial_parameters.csv
  heavy = true
  requirement = 'The system shall be able to model deuterium transport in proton-conducting ceramics without trapping effects under fine mesh and time step to generate CSV data output.'
[]


[val-2g_trapping_initial_csv]
  type = CSVDiff
  input = 'parameters_trapping_initial_validation.params val-2g_trapping.i'
  cli_args = "Outputs/file_base=val-2g_trapping_initial_parameters"
  csvdiff = val-2g_trapping_initial_parameters.csv
  heavy = true
  requirement = 'The system shall be able to model deuterium transport in proton-conducting ceramics with trapping effects under fine mesh and time step to generate CSV data output.'
[]


[val-2g_trapping_calibrated_csv]
  type = CSVDiff
  input = 'parameters_trapping_calibrated_validation.params val-2g_trapping.i'
  cli_args = "Outputs/file_base=val-2g_trapping_calibrated"
  csvdiff = val-2g_trapping_calibrated.csv
  heavy = true
  requirement = 'The system shall be able to model deuterium transport in proton-conducting ceramics with trapping effects using calibrated parameters under fine mesh and time step to generate CSV data output.'
[]


[val-2g_pss_optimization]
  type = JSONDiff
  input = val-2g_main_PSS_trapping.i
  cli_args = "Executioner/num_steps=1 Samplers/sample/num_subsets=1 MultiApps/sub/cli_args='Postprocessors/max_time_step_size/function=100;edge_number=100;num_nodes=300;Executioner/num_steps=1'"
  jsondiff = val-2g_PSS/both_cases_trapping.json
  abs_zero = 1e-8
  rel_err = 1e-5
  max_parallel = 1
  recover = false
  heavy = true
  requirement = 'The system shall be able to perform a Parallel Subset Simulation optimization study for deuterium transport in proton-conducting ceramics.'
[]


[val-2g_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2g.py'
  requirement = 'The system shall be able to generate comparison plots between simulated solutions and experimental data of validation case val-2g, modeling deuterium transport in proton-conducting ceramics.'
  required_python_packages = 'matplotlib numpy pandas scipy'
[]


[val-2j_csvdiff]
  type = CSVDiff
  input = 'val-2j.i'
  csvdiff = val-2j_out.csv
  requirement = 'The system shall be able to model tritium TDS from Li2TiO3 with a fine mesh to compare with experimental desorption data from Kobayashi et al. (2015).'
[]


[val-2j_optimized_csvdiff]
  type = CSVDiff
  input = 'val-2j.i optimal_bayesian_params.i'
  csvdiff = 'val-2j_optimal_bayesian_params_out.csv'
  cli_args = 'Outputs/file_base=val-2j_optimal_bayesian_params_out'
  prereq = val-2j_csvdiff
  requirement = 'The system shall model tritium TDS from Li2TiO3 with Bayesian-optimized parameters.'
[]


[val-2j_optimized_exodiff]
  type = Exodiff
  input = 'val-2j.i optimal_bayesian_params.i'
  exodiff = 'val-2j_optimal_bayesian_params_out.e'
  cli_args = 'Outputs/file_base=val-2j_optimal_bayesian_params_out'
  prereq = val-2j_optimized_csvdiff
  should_execute = false
  requirement = 'The system shall model tritium TDS from Li2TiO3 with Bayesian-optimized parameters including full simulation outputs.'
[]


[val-2j_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2j.py'
  requirement = 'The system shall generate comparison plots between TMAP8 simulation and experimental TDS data for Li2TiO3 Sample E.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[val-2j_bayesian_json]
  type = JSONDiff
  input = bayesian_main_val2j.i
  cli_args = "Executioner/num_steps=2
                Samplers/sample/num_parallel_proposals=2
                Samplers/sample/num_tries=100
                Outputs/file_base=bayesian_val2j_results/val2j_bayesian_short_out
                MultiApps/sub/cli_args='num_elems=10'"
  jsondiff = bayesian_val2j_results/val2j_bayesian_short_out.json
  abs_zero = 1e-8
  rel_err = 1e-5
  skip_keys = 'acquisition_function'
  max_parallel = 1
  recover = false
  requirement = 'The system shall perform Bayesian optimization of TDS model parameters for Li2TiO3.'
[]


[ver-1d_diffusion_limited]
  type = Exodiff
  input = ver-1d-diffusion.i
  exodiff = ver-1d_diffusion_limited_test_exodus.e
  cli_args = "node_num=20 Executioner/num_steps=300 Outputs/file_base=ver-1d_diffusion_limited_test_exodus"
  requirement = 'The system shall be able to model a breakthrough problem where diffusion is the rate limiting process.'
[]


[ver-1d_diffusion_limited_csvdiff]
  type = CSVDiff
  input = ver-1d-diffusion.i
  should_execute = false
  csvdiff = ver-1d_diffusion_limited_test_exodus.csv
  cli_args = "node_num=20 Executioner/num_steps=300 Outputs/file_base=ver-1d_diffusion_limited_test_exodus"
  requirement = 'The system shall be able to model a breakthrough problem where diffusion is the rate limiting process to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1d_diffusion_limited
[]


[ver-1d_diffusion_limited_heavy]
  type = Exodiff
  heavy = true
  input = ver-1d-diffusion.i
  exodiff = ver-1d-diffusion_out.e
  requirement = 'The system shall be able to model a breakthrough problem where diffusion is the rate limiting process, with the fine mesh and time step required to match the analytical solution for the verification case.'
[]


[ver-1d_diffusion_limited_heavy_csvdiff]
  type = CSVDiff
  heavy = true
  input = ver-1d-diffusion.i
  should_execute = false # this test relies on the output files from ver-1d_diffusion_limited_heavy, so it shouldn't be run twice
  csvdiff = ver-1d-diffusion_out.csv
  prereq = ver-1d_diffusion_limited_heavy
  requirement = 'The system shall be able to model a breakthrough problem where diffusion is the rate limiting process,
    with the fine mesh and time step required to match the analytical solution for the verification case and generate CSV data for use in comparisons with the analytic solution.'
[]


[diffusion_limited_components]
  type = Exodiff
  input = ver-1d-diffusion-component.i
  exodiff = ver-1d-diffusion-component_out.e
  cli_args = "node_num=20 Executioner/num_steps=300"
  requirement = 'The system shall be able to model a breakthrough problem where diffusion is the rate limiting process using the Physics and Components syntax.'
  verification = 'ver-1d.md'
  # Physics does not use reference residual syntax
  rel_err = 1e-5
  abs_zero = 1e-8
[]


[diffusion_limited_components_csvdiff]
  type = CSVDiff
  input = ver-1d-diffusion-component.i
  should_execute = false
  csvdiff = ver-1d-diffusion-component_out.csv
  cli_args = "node_num=20 Executioner/num_steps=300"
  requirement = 'The system shall be able to model a breakthrough problem where diffusion is the rate limiting process using the Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution.'
  verification = 'ver-1d.md'
  prereq = diffusion_limited_components
  # Physics does not use reference residual syntax
  rel_err = 1e-5
  abs_zero = 1e-8
[]


[ver-1d_trapping_limited]
  type = Exodiff
  input = ver-1d-trapping.i
  exodiff = ver-1d_trapping_limited_test_exodus.e
  requirement = 'The system shall be able to model a breakthrough problem where trapping is the rate limiting process.'
  cli_args = "node_num=20 Executioner/num_steps=300 Outputs/file_base=ver-1d_trapping_limited_test_exodus"
[]


[ver-1d_trapping_limited_csvdiff]
  type = CSVDiff
  input = ver-1d-trapping.i
  should_execute = false
  csvdiff = ver-1d_trapping_limited_test_exodus.csv
  requirement = 'The system shall be able to model a breakthrough problem where trapping is the rate limiting process to generate CSV data for use in comparisons with the analytic solution.'
  cli_args = "node_num=20 Executioner/num_steps=300 Outputs/file_base=ver-1d_trapping_limited_test_exodus"
  prereq = ver-1d_trapping_limited
[]


[ver-1d_trapping_limited_heavy]
  type = Exodiff
  heavy = true
  input = ver-1d-trapping.i
  exodiff = ver-1d-trapping_out.e
  requirement = 'The system shall be able to model a breakthrough problem where trapping is the rate limiting process with the fine mesh and time step required to match the analytical solution for the verification case.'
[]


[ver-1d_trapping_limited_heavy_csvdiff]
  type = CSVDiff
  heavy = true
  input = ver-1d-trapping.i
  should_execute = false # this test relies on the output files from ver-1d_trapping_limited_heavy, so it shouldn't be run twice
  csvdiff = ver-1d-trapping_out.csv
  prereq = ver-1d_trapping_limited_heavy
  requirement = 'The system shall be able to model a breakthrough problem where trapping is the rate limiting process with the fine mesh and time step required to match the analytical solution for the verification case and generate CSV data for use in comparisons with the analytic solution.'
[]


[ver-1d_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1d.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solutions of verification cases 1d, modeling a breakthrough problem where diffusion and trapping are the rate limiting processes.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1dc_limited]
  type = Exodiff
  input = ver-1dc.i
  exodiff = ver-1dc_limited_test_exodus.e
  cli_args = "nx_num=20 Executioner/num_steps=300 Outputs/file_base=ver-1dc_limited_test_exodus"
  requirement = 'The system shall be able to model a breakthrough problem of multiple traps.'
[]


[ver-1dc_limited_csvdiff]
  type = CSVDiff
  input = ver-1dc.i
  should_execute = false
  csvdiff = ver-1dc_limited_test_exodus.csv
  cli_args = "nx_num=20 Executioner/num_steps=300 Outputs/file_base=ver-1dc_limited_test_exodus"
  requirement = 'The system shall be able to model a breakthrough problem of multiple traps to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1dc_limited
[]


[ver-1dc_limited_heavy]
  type = Exodiff
  heavy = true
  input = ver-1dc.i
  exodiff = ver-1dc_out.e
  requirement = 'The system shall be able to model a breakthrough problem of multiple traps, with the fine mesh and time step required to match the analytical solution for the verification case.'
[]


[ver-1dc_limited_heavy_csvdiff]
  type = CSVDiff
  heavy = true
  input = ver-1dc.i
  should_execute = false # this test relies on the output files from ver-1dc_limited_heavy, so it shouldn't be run twice
  csvdiff = ver-1dc_out.csv
  prereq = ver-1dc_limited_heavy
  requirement = 'The system shall be able to model a breakthrough problem of multiple traps,
    with the fine mesh and time step required to match the analytical solution for the verification case and generate CSV data for use in comparisons with the analytic solution.'
[]


[ver-1d_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1dc.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solutions of verification cases 1dc, modeling a breakthrough problem of multiple traps.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[ver-1dc-mms]
  type = MMSTest
  input = test.py
  test_case = TestMMS
  heavy = true
  requirement = 'The system shall show second order spatial convergence for a diffusion-trapping-release test case.'
[]


[ver-1dc_limited-components]
  type = Exodiff
  input = ver-1dc-components.i
  exodiff = ver-1dc-components_limited_test_exodus.e
  cli_args = "nx_num=20 Executioner/num_steps=300 Outputs/file_base=ver-1dc-components_limited_test_exodus"
  requirement = 'The system shall be able to model a breakthrough problem of multiple traps using the Physics and Components shorthand syntax.'
[]


[ver-1dc_limited-components_csvdiff]
  type = CSVDiff
  input = ver-1dc-components.i
  should_execute = false
  csvdiff = ver-1dc-components_limited_test_exodus.csv
  cli_args = "nx_num=20 Executioner/num_steps=300 Outputs/file_base=ver-1dc-components_limited_test_exodus"
  requirement = 'The system shall be able to model a breakthrough problem of multiple traps using the Physics and Components shorthand syntax to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1dc_limited-components
[]


[ver-1dd_csvdiff]
  type = CSVDiff
  input = ver-1dd.i
  should_execute = false # this test relies on the output files from ver-1dd, so it shouldn't be run twice
  csvdiff = ver-1dd_out.csv
  prereq = ver-1dd
  requirement = 'The system shall be able to model a breakthrough problem without traps, and generate CSV data for use in comparisons with the analytic solution.'
[]


[ver-1d_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1dd.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solutions of verification cases 1dd, modeling a breakthrough problem without traps.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[ver-1dd_csvdiff-components]
  type = CSVDiff
  input = ver-1dd-components.i
  # To make it run at the end
  prereq = 'ver-1d_comparison'
  csvdiff = 'ver-1dd-components_out.csv'
  requirement = 'The system shall be able to model a breakthrough problem without traps using the Physics and Components shorthand syntax to generate CSV data for use in comparisons with the analytic solution.'
[]


[ver-1dd-components]
  type = Exodiff
  input = ver-1dd-components.i
  should_execute = false
  # To make it run at the end
  prereq = 'ver-1dd_csvdiff-components'
  exodiff = 'ver-1dd-components_out.e'
  requirement = 'The system shall be able to model a breakthrough problem without traps using the Physics and Components shorthand syntax.'
[]


[ver-1jb_csvdiff]
  type = CSVDiff
  input = ver-1jb.i
  csvdiff = ver-1jb_time_dependent_out.csv
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps, with the fine mesh and timestep required to match the analytical solution to generate CSV
                   data for use in comparisons with the analytic solution.'
[]


[ver-1jb_csvdiff_profile]
  type = CSVDiff
  input = ver-1jb.i
  csvdiff = ver-1jb_profile_out_line_0048.csv
  should_execute = false # uses ver-1jb_csvdiff
  prereq = ver-1jb_csvdiff
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps and output the profiles of concentrations.'
[]


[ver-1jb_csvdiff_equivalent_concentrations]
  type = CSVDiff
  input = ver-1jb.i
  cli_args = 'tritium_mobile_concentration_initial=1e25
                trap_per_free=1
                Outputs/file_base=ver-1jb_equivalent_concentrations_out
                Outputs/time_dependent_out/file_base=ver-1jb_equivalent_concentrations_time_dependent_out
                Outputs/profile_out/file_base=ver-1jb_equivalent_concentrations_profile_out'
  csvdiff = ver-1jb_equivalent_concentrations_time_dependent_out.csv
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps with equivalent initial mobile and trapped tritium concentration,
                   with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in
                   comparisons with the analytic solution.'
[]


[ver-1jb_csvdiff_profile_equivalent_concentrations]
  type = CSVDiff
  input = ver-1jb.i
  cli_args = 'tritium_mobile_concentration_initial=1e25
                trap_per_free=1
                Outputs/file_base=ver-1jb_equivalent_concentrations_out
                Outputs/time_dependent_out/file_base=ver-1jb_equivalent_concentrations_time_dependent_out
                Outputs/profile_out/file_base=ver-1jb_equivalent_concentrations_profile_out'
  csvdiff = ver-1jb_equivalent_concentrations_profile_out_line_0048.csv
  should_execute = false # uses ver-1jb_csvdiff_equivalent_concentrations
  prereq = ver-1jb_csvdiff_equivalent_concentrations
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps with equivalent initial mobile and trapped tritium concentration and output the
                   profiles of concentrations.'
[]


[ver-1jb_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1jb.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution
                   when modeling decay of tritium and associated growth of He in a diffusion segment with distributed traps.'
  required_python_packages = 'csv matplotlib numpy pandas os'
[]


[val-2d_csvdiff]
  type = CSVDiff
  input = 'val-2d.i'
  cli_args = 'Mesh/active=cartesian_mesh_coarse Postprocessors/max_time_step_size/function=max_dt_size_function_coarse Executioner/nl_rel_tol=8e-9 Outputs/file_base=val-2d_limited_out'
  csvdiff = val-2d_limited_out.csv
  requirement = 'The system shall be able to model thermal desorption spectroscopy on Tungsten.'
[]


[val-2d_exodiff]
  type = Exodiff
  input = 'val-2d.i'
  cli_args = 'Mesh/active=cartesian_mesh_coarse Postprocessors/max_time_step_size/function=max_dt_size_function_coarse Executioner/nl_rel_tol=8e-9 Outputs/file_base=val-2d_limited_out'
  exodiff = val-2d_limited_out.e
  prereq = val-2d_csvdiff
  should_execute = false # this test relies on the output files from val-2d_csvdiff, so it shouldn't be run twice
  requirement = 'The system shall be able to model thermal desorption spectroscopy on Tungsten to include full set of simulation outputs, including tritium concentration, diffusion flux, and trapping properties.'
[]


[val-2d_heavy_csvdiff]
  type = CSVDiff
  input = 'val-2d.i'
  csvdiff = val-2d_out.csv
  heavy = true
  requirement = 'The system shall be able to model thermal desorption spectroscopy on Tungsten with fine mesh and time step to compare with the desorption flux from experiment results.'
[]


[val-2d_heavy_exodiff]
  type = Exodiff
  input = 'val-2d.i'
  exodiff = val-2d_out.e
  prereq = val-2d_csvdiff
  heavy = true
  should_execute = false # this test relies on the output files from val-2d_csvdiff, so it shouldn't be run twice
  requirement = 'The system shall be able to model thermal desorption spectroscopy on Tungsten with fine mesh and time step to include full set of simulation outputs, including tritium concentration, diffusion flux, and trapping properties.'
[]


[val-2d_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2d.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of validation case 2d, modeling thermal desorption spectroscopy on Tungsten.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[val-2f_light_csv]
  type = CSVDiff
  input = val-2f.i
  cli_args = "sample_thickness='${units 0.9e-4 m -> mum}'
                ix1=8 ix2=8 ix3=8 ix4=8 ix5=8
                dt_init=2e-3
                charge_time='${units 1e-1 s}' cooldown_duration='${units 1e-1 s}'
                Executioner/TimeStepper/timestep_limiting_postprocessor=max_time_step_size_coarse
                Outputs/csv/file_base=val-2f_light_out
                Outputs/exodus/file_base=val-2f_light_out
                Outputs/csv/start_time=0.2
                Executioner/TimeStepper/growth_factor=1.05
                Executioner/scheme=implicit-euler"
  csvdiff = val-2f_light_out.csv
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport and generate CSV data output with a short runtime and coarse mesh testing.'
  rel_err = 1e-3
  override_columns = 'scaled_flux_surface_right scaled_flux_surface_left scaled_mobile_deuterium'
  override_abs_zero = '1e4                      1e6                      1e7'
  override_rel_err = '1e-3                      1e-3                     1e-3'
  # Some relevant scales when considering diffs
  #
  # scaled_flux_surface_right          O(1e12)
  # scaled_flux_surface_left           O(1e19)
  # scaled_mobile_deuterium            O(1e13)
  # scaled_trapped_deuterium_intrinsic O(1e14)
[]


[val-2f_light_exodus]
  type = Exodiff
  input = val-2f.i
  exodiff = val-2f_light_out.e
  prereq = val-2f_light_csv
  should_execute = false # this test relies on the output files from val-2f_light_csv, so it shouldn't be run twice
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport with a short runtime and coarse mesh testing.'
  rel_err = 1e-3
  abs_zero = 1e-5
[]


[val-2f_heavy_csv_implicit-euler]
  type = CSVDiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/exodus/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/exodus/time_step_interval=400
                Outputs/csv/file_base=val-2f_heavy_desorption_out
                Outputs/exodus/file_base=val-2f_heavy_desorption_out
                Outputs/csv_temperature_history/file_base=val-2f_temperature_implicit_euler_out
                Executioner/scheme=implicit-euler"
  csvdiff = val-2f_heavy_desorption_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output. Only desorption phase data is compared with every other timestep.'
  max_time = 2000
[]


[val-2f_heavy_exodus_implicit-euler]
  type = Exodiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/exodus/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/exodus/time_step_interval=400
                Outputs/csv/file_base=val-2f_heavy_desorption_out
                Outputs/exodus/file_base=val-2f_heavy_desorption_out
                Outputs/csv_temperature_history/file_base=val-2f_temperature_implicit_euler_out
                Executioner/scheme=implicit-euler"
  exodiff = val-2f_heavy_desorption_out.e
  heavy = true
  prereq = val-2f_heavy_csv_implicit-euler
  should_execute = false # this test relies on the output files from val-2f_heavy_csv_implicit-euler, so it shouldn't be run twice
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability. Only desorption phase data is compared with every other timestep.'
[]


[val-2f_heavy_temperature_csv_implicit-euler]
  type = CSVDiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/exodus/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/exodus/time_step_interval=400
                Outputs/csv_temperature_history/file_base=val-2f_temperature_implicit_euler_out
                Executioner/scheme=implicit-euler"
  prereq = val-2f_heavy_csv_implicit-euler
  should_execute = false # this test relies on the output files from val-2f_heavy_csv_implicit-euler, so it shouldn't be run twice
  csvdiff = val-2f_temperature_implicit_euler_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output about the temperature for documentation plots.'
  max_time = 2000
[]


[val-2f_heavy_csv_inf_recombination_implicit-euler]
  type = CSVDiff
  input = val-2f.i
  cli_args = "ix1='${fparse 500}' ix4='${fparse 500}'
                AuxVariables/active='bounds_dummy temperature'
                BCs/active='left_concentration_sieverts right_concentration_sieverts'
                Physics/SpeciesTrapping/trapping_1/Ct0='trap_distribution_function_1_inf'
                Physics/SpeciesTrapping/trapping_2/Ct0='trap_distribution_function_2_inf'
                Physics/SpeciesTrapping/trapping_3/Ct0='trap_distribution_function_3_inf'
                Physics/SpeciesTrapping/trapping_4/Ct0='trap_distribution_function_4_inf'
                Physics/SpeciesTrapping/trapping_5/Ct0='trap_distribution_function_5_inf'
                Materials/active='diffusivity_W_func diffusivity_nonAD'
                Postprocessors/active='integral_source_deuterium scaled_implanted_deuterium integral_deuterium_concentration scaled_mobile_deuterium flux_surface_left_sieverts scaled_flux_surface_left_sieverts flux_surface_right_sieverts scaled_flux_surface_right_sieverts temperature_pps max_time_step_size max_time_step_size_coarse integral_trapped_concentration_1 scaled_trapped_deuterium_1 integral_trapped_concentration_2 scaled_trapped_deuterium_2 integral_trapped_concentration_3 scaled_trapped_deuterium_3 integral_trapped_concentration_4 scaled_trapped_deuterium_4 integral_trapped_concentration_5 scaled_trapped_deuterium_5 integral_trapped_concentration_intrinsic scaled_trapped_deuterium_intrinsic'
                Postprocessors/max_time_step_size/function=max_dt_size_function_inf
                Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/csv/file_base=val-2f_heavy_desorption_inf_recombination_out
                Outputs/exodus/file_base=val-2f_heavy_desorption_inf_recombination_out
                Executioner/abort_on_solve_fail=false
                Executioner/nl_abs_tol=5e-4
                Executioner/scheme=implicit-euler"
  csvdiff = val-2f_heavy_desorption_inf_recombination_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output, for the infinite recombination case. Only desorption phase data is compared with every other timestep.'
  max_time = 3600
[]


[val-2f_heavy_csv_bdf2]
  type = CSVDiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/sync_times='${fparse charge_time_hat + cooldown_duration_hat}'"
  csvdiff = val-2f_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output.'
  max_time = 2000
  rel_err = 1e-4
  override_columns = 'scaled_flux_surface_right scaled_flux_surface_left scaled_mobile_deuterium scaled_trapped_deuterium_1 scaled_trapped_deuterium_2'
  override_abs_zero = '1e4                      1e6                      1e4                     1e9                        1e4'
  override_rel_err = '5e-3                      1e-3                     9e-3                    5e-3                       5e-3'
[]


[val-2f_heavy_csv_inf_recombination_bdf2]
  type = CSVDiff
  input = val-2f.i
  cli_args = "ix1='${fparse 500}' ix4='${fparse 500}'
                AuxVariables/active='bounds_dummy temperature'
                BCs/active='left_concentration_sieverts right_concentration_sieverts'
                Physics/SpeciesTrapping/trapping_1/Ct0='trap_distribution_function_1_inf'
                Physics/SpeciesTrapping/trapping_2/Ct0='trap_distribution_function_2_inf'
                Physics/SpeciesTrapping/trapping_3/Ct0='trap_distribution_function_3_inf'
                Physics/SpeciesTrapping/trapping_4/Ct0='trap_distribution_function_4_inf'
                Physics/SpeciesTrapping/trapping_5/Ct0='trap_distribution_function_5_inf'
                Materials/active='diffusivity_W_func diffusivity_nonAD'
                Postprocessors/active='integral_source_deuterium scaled_implanted_deuterium integral_deuterium_concentration scaled_mobile_deuterium flux_surface_left_sieverts scaled_flux_surface_left_sieverts flux_surface_right_sieverts scaled_flux_surface_right_sieverts temperature_pps diffusion_W_hat diffusion_W max_time_step_size max_time_step_size_coarse integral_trapped_concentration_1 scaled_trapped_deuterium_1 integral_trapped_concentration_2 scaled_trapped_deuterium_2 integral_trapped_concentration_3 scaled_trapped_deuterium_3 integral_trapped_concentration_4 scaled_trapped_deuterium_4 integral_trapped_concentration_5 scaled_trapped_deuterium_5 integral_trapped_concentration_intrinsic scaled_trapped_deuterium_intrinsic spatial_max_mobile_d2 spatial_max_trapped_1 spatial_max_trapped_2 spatial_max_trapped_3 spatial_max_trapped_4 spatial_max_trapped_5 spatial_max_trapped_intrinsic max_mobile_d2 max_trapped_1 max_trapped_2 max_trapped_3 max_trapped_4 max_trapped_5 max_trapped_intrinsic max_scaled_flux_surface_left_sieverts max_scaled_flux_surface_right_sieverts max_scaled_mobile_deuterium max_scaled_trapped_deuterium_intrinsic'
                Postprocessors/max_time_step_size/function=max_dt_size_function_inf
                Outputs/csv/file_base='val-2f_out_inf_recombination'
                Outputs/exodus/file_base='val-2f_out_inf_recombination'
                Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/sync_times='${fparse charge_time_hat + cooldown_duration_hat}'
                Executioner/abort_on_solve_fail=false
                Executioner/nl_abs_tol=5e-4"
  csvdiff = val-2f_out_inf_recombination.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output, for the infinite recombination case.'
  max_time = 3600
  rel_err = 1e-5
  abs_zero = 1e4
  override_columns = 'scaled_flux_surface_right_sieverts scaled_flux_surface_left_sieverts scaled_mobile_deuterium scaled_trapped_deuterium_1 scaled_trapped_deuterium_2 scaled_trapped_deuterium_3 scaled_trapped_deuterium_4 scaled_trapped_deuterium_5'
  override_abs_zero = '1e6                               1e9                               1e6                     1e9                        1e9                        1e9                        1e9                        1e10'
  override_rel_err = '1e-3                               3e-3                              5e-3                    1e-3                       1e-3                       3e-3                       1e-3                       5e-5'
[]


[val-2f_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2f.py'
  requirement = 'The system shall be able to generate comparison plots between simulated solutions and experimental data of validation case val-2f, modeling self-damaged tungsten effects on deuterium transport.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[val-2g_trapping_initial_light_csv]
  type = CSVDiff
  input = 'val-2g_trapping_light.i'
  cli_args = "Outputs/file_base=val-2g_trapping_initial_light_out"
  csvdiff = val-2g_trapping_initial_light_out.csv
  requirement = 'The system shall be able to model deuterium transport in proton-conducting ceramics with trapping effects to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2g_trapping_initial_light_exodus]
  type = Exodiff
  input = 'val-2g_trapping_light.i'
  cli_args = "Outputs/file_base=val-2g_trapping_initial_light_out"
  exodiff = val-2g_trapping_initial_light_out.e
  prereq = val-2g_trapping_initial_light_csv
  should_execute = false # this test relies on the output files from val-2g_trapping_initial_light_csv, so it shouldn't be run twice
  requirement = 'The system shall be able to model deuterium transport in proton-conducting ceramics with trapping effects.'
[]


[val-2g_no_trapping_initial_csv]
  type = CSVDiff
  input = 'parameters_no_trapping_initial_validation.params val-2g_trapping.i'
  cli_args = "trapping_site_fraction_1=0 Outputs/file_base=val-2g_no_trapping_initial_parameters"
  csvdiff = val-2g_no_trapping_initial_parameters.csv
  heavy = true
  requirement = 'The system shall be able to model deuterium transport in proton-conducting ceramics without trapping effects under fine mesh and time step to generate CSV data output.'
[]


[val-2g_trapping_initial_csv]
  type = CSVDiff
  input = 'parameters_trapping_initial_validation.params val-2g_trapping.i'
  cli_args = "Outputs/file_base=val-2g_trapping_initial_parameters"
  csvdiff = val-2g_trapping_initial_parameters.csv
  heavy = true
  requirement = 'The system shall be able to model deuterium transport in proton-conducting ceramics with trapping effects under fine mesh and time step to generate CSV data output.'
[]


[val-2g_trapping_calibrated_csv]
  type = CSVDiff
  input = 'parameters_trapping_calibrated_validation.params val-2g_trapping.i'
  cli_args = "Outputs/file_base=val-2g_trapping_calibrated"
  csvdiff = val-2g_trapping_calibrated.csv
  heavy = true
  requirement = 'The system shall be able to model deuterium transport in proton-conducting ceramics with trapping effects using calibrated parameters under fine mesh and time step to generate CSV data output.'
[]


[val-2g_pss_optimization]
  type = JSONDiff
  input = val-2g_main_PSS_trapping.i
  cli_args = "Executioner/num_steps=1 Samplers/sample/num_subsets=1 MultiApps/sub/cli_args='Postprocessors/max_time_step_size/function=100;edge_number=100;num_nodes=300;Executioner/num_steps=1'"
  jsondiff = val-2g_PSS/both_cases_trapping.json
  abs_zero = 1e-8
  rel_err = 1e-5
  max_parallel = 1
  recover = false
  heavy = true
  requirement = 'The system shall be able to perform a Parallel Subset Simulation optimization study for deuterium transport in proton-conducting ceramics.'
[]


[val-2g_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2g.py'
  requirement = 'The system shall be able to generate comparison plots between simulated solutions and experimental data of validation case val-2g, modeling deuterium transport in proton-conducting ceramics.'
  required_python_packages = 'matplotlib numpy pandas scipy'
[]


[val-2j_csvdiff]
  type = CSVDiff
  input = 'val-2j.i'
  csvdiff = val-2j_out.csv
  requirement = 'The system shall be able to model tritium TDS from Li2TiO3 with a fine mesh to compare with experimental desorption data from Kobayashi et al. (2015).'
[]


[val-2j_optimized_csvdiff]
  type = CSVDiff
  input = 'val-2j.i optimal_bayesian_params.i'
  csvdiff = 'val-2j_optimal_bayesian_params_out.csv'
  cli_args = 'Outputs/file_base=val-2j_optimal_bayesian_params_out'
  prereq = val-2j_csvdiff
  requirement = 'The system shall model tritium TDS from Li2TiO3 with Bayesian-optimized parameters.'
[]


[val-2j_optimized_exodiff]
  type = Exodiff
  input = 'val-2j.i optimal_bayesian_params.i'
  exodiff = 'val-2j_optimal_bayesian_params_out.e'
  cli_args = 'Outputs/file_base=val-2j_optimal_bayesian_params_out'
  prereq = val-2j_optimized_csvdiff
  should_execute = false
  requirement = 'The system shall model tritium TDS from Li2TiO3 with Bayesian-optimized parameters including full simulation outputs.'
[]


[val-2j_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2j.py'
  requirement = 'The system shall generate comparison plots between TMAP8 simulation and experimental TDS data for Li2TiO3 Sample E.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[val-2j_bayesian_json]
  type = JSONDiff
  input = bayesian_main_val2j.i
  cli_args = "Executioner/num_steps=2
                Samplers/sample/num_parallel_proposals=2
                Samplers/sample/num_tries=100
                Outputs/file_base=bayesian_val2j_results/val2j_bayesian_short_out
                MultiApps/sub/cli_args='num_elems=10'"
  jsondiff = bayesian_val2j_results/val2j_bayesian_short_out.json
  abs_zero = 1e-8
  rel_err = 1e-5
  skip_keys = 'acquisition_function'
  max_parallel = 1
  recover = false
  requirement = 'The system shall perform Bayesian optimization of TDS model parameters for Li2TiO3.'
[]


[ver-1d_diffusion_limited]
  type = Exodiff
  input = ver-1d-diffusion.i
  exodiff = ver-1d_diffusion_limited_test_exodus.e
  cli_args = "node_num=20 Executioner/num_steps=300 Outputs/file_base=ver-1d_diffusion_limited_test_exodus"
  requirement = 'The system shall be able to model a breakthrough problem where diffusion is the rate limiting process.'
[]


[ver-1d_diffusion_limited_csvdiff]
  type = CSVDiff
  input = ver-1d-diffusion.i
  should_execute = false
  csvdiff = ver-1d_diffusion_limited_test_exodus.csv
  cli_args = "node_num=20 Executioner/num_steps=300 Outputs/file_base=ver-1d_diffusion_limited_test_exodus"
  requirement = 'The system shall be able to model a breakthrough problem where diffusion is the rate limiting process to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1d_diffusion_limited
[]


[ver-1d_diffusion_limited_heavy]
  type = Exodiff
  heavy = true
  input = ver-1d-diffusion.i
  exodiff = ver-1d-diffusion_out.e
  requirement = 'The system shall be able to model a breakthrough problem where diffusion is the rate limiting process, with the fine mesh and time step required to match the analytical solution for the verification case.'
[]


[ver-1d_diffusion_limited_heavy_csvdiff]
  type = CSVDiff
  heavy = true
  input = ver-1d-diffusion.i
  should_execute = false # this test relies on the output files from ver-1d_diffusion_limited_heavy, so it shouldn't be run twice
  csvdiff = ver-1d-diffusion_out.csv
  prereq = ver-1d_diffusion_limited_heavy
  requirement = 'The system shall be able to model a breakthrough problem where diffusion is the rate limiting process,
    with the fine mesh and time step required to match the analytical solution for the verification case and generate CSV data for use in comparisons with the analytic solution.'
[]


[diffusion_limited_components]
  type = Exodiff
  input = ver-1d-diffusion-component.i
  exodiff = ver-1d-diffusion-component_out.e
  cli_args = "node_num=20 Executioner/num_steps=300"
  requirement = 'The system shall be able to model a breakthrough problem where diffusion is the rate limiting process using the Physics and Components syntax.'
  verification = 'ver-1d.md'
  # Physics does not use reference residual syntax
  rel_err = 1e-5
  abs_zero = 1e-8
[]


[diffusion_limited_components_csvdiff]
  type = CSVDiff
  input = ver-1d-diffusion-component.i
  should_execute = false
  csvdiff = ver-1d-diffusion-component_out.csv
  cli_args = "node_num=20 Executioner/num_steps=300"
  requirement = 'The system shall be able to model a breakthrough problem where diffusion is the rate limiting process using the Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution.'
  verification = 'ver-1d.md'
  prereq = diffusion_limited_components
  # Physics does not use reference residual syntax
  rel_err = 1e-5
  abs_zero = 1e-8
[]


[ver-1d_trapping_limited]
  type = Exodiff
  input = ver-1d-trapping.i
  exodiff = ver-1d_trapping_limited_test_exodus.e
  requirement = 'The system shall be able to model a breakthrough problem where trapping is the rate limiting process.'
  cli_args = "node_num=20 Executioner/num_steps=300 Outputs/file_base=ver-1d_trapping_limited_test_exodus"
[]


[ver-1d_trapping_limited_csvdiff]
  type = CSVDiff
  input = ver-1d-trapping.i
  should_execute = false
  csvdiff = ver-1d_trapping_limited_test_exodus.csv
  requirement = 'The system shall be able to model a breakthrough problem where trapping is the rate limiting process to generate CSV data for use in comparisons with the analytic solution.'
  cli_args = "node_num=20 Executioner/num_steps=300 Outputs/file_base=ver-1d_trapping_limited_test_exodus"
  prereq = ver-1d_trapping_limited
[]


[ver-1d_trapping_limited_heavy]
  type = Exodiff
  heavy = true
  input = ver-1d-trapping.i
  exodiff = ver-1d-trapping_out.e
  requirement = 'The system shall be able to model a breakthrough problem where trapping is the rate limiting process with the fine mesh and time step required to match the analytical solution for the verification case.'
[]


[ver-1d_trapping_limited_heavy_csvdiff]
  type = CSVDiff
  heavy = true
  input = ver-1d-trapping.i
  should_execute = false # this test relies on the output files from ver-1d_trapping_limited_heavy, so it shouldn't be run twice
  csvdiff = ver-1d-trapping_out.csv
  prereq = ver-1d_trapping_limited_heavy
  requirement = 'The system shall be able to model a breakthrough problem where trapping is the rate limiting process with the fine mesh and time step required to match the analytical solution for the verification case and generate CSV data for use in comparisons with the analytic solution.'
[]


[ver-1d_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1d.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solutions of verification cases 1d, modeling a breakthrough problem where diffusion and trapping are the rate limiting processes.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1dc_limited]
  type = Exodiff
  input = ver-1dc.i
  exodiff = ver-1dc_limited_test_exodus.e
  cli_args = "nx_num=20 Executioner/num_steps=300 Outputs/file_base=ver-1dc_limited_test_exodus"
  requirement = 'The system shall be able to model a breakthrough problem of multiple traps.'
[]


[ver-1dc_limited_csvdiff]
  type = CSVDiff
  input = ver-1dc.i
  should_execute = false
  csvdiff = ver-1dc_limited_test_exodus.csv
  cli_args = "nx_num=20 Executioner/num_steps=300 Outputs/file_base=ver-1dc_limited_test_exodus"
  requirement = 'The system shall be able to model a breakthrough problem of multiple traps to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1dc_limited
[]


[ver-1dc_limited_heavy]
  type = Exodiff
  heavy = true
  input = ver-1dc.i
  exodiff = ver-1dc_out.e
  requirement = 'The system shall be able to model a breakthrough problem of multiple traps, with the fine mesh and time step required to match the analytical solution for the verification case.'
[]


[ver-1dc_limited_heavy_csvdiff]
  type = CSVDiff
  heavy = true
  input = ver-1dc.i
  should_execute = false # this test relies on the output files from ver-1dc_limited_heavy, so it shouldn't be run twice
  csvdiff = ver-1dc_out.csv
  prereq = ver-1dc_limited_heavy
  requirement = 'The system shall be able to model a breakthrough problem of multiple traps,
    with the fine mesh and time step required to match the analytical solution for the verification case and generate CSV data for use in comparisons with the analytic solution.'
[]


[ver-1d_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1dc.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solutions of verification cases 1dc, modeling a breakthrough problem of multiple traps.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[ver-1dc-mms]
  type = MMSTest
  input = test.py
  test_case = TestMMS
  heavy = true
  requirement = 'The system shall show second order spatial convergence for a diffusion-trapping-release test case.'
[]


[ver-1dc_limited-components]
  type = Exodiff
  input = ver-1dc-components.i
  exodiff = ver-1dc-components_limited_test_exodus.e
  cli_args = "nx_num=20 Executioner/num_steps=300 Outputs/file_base=ver-1dc-components_limited_test_exodus"
  requirement = 'The system shall be able to model a breakthrough problem of multiple traps using the Physics and Components shorthand syntax.'
[]


[ver-1dc_limited-components_csvdiff]
  type = CSVDiff
  input = ver-1dc-components.i
  should_execute = false
  csvdiff = ver-1dc-components_limited_test_exodus.csv
  cli_args = "nx_num=20 Executioner/num_steps=300 Outputs/file_base=ver-1dc-components_limited_test_exodus"
  requirement = 'The system shall be able to model a breakthrough problem of multiple traps using the Physics and Components shorthand syntax to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1dc_limited-components
[]


[ver-1dd_csvdiff]
  type = CSVDiff
  input = ver-1dd.i
  should_execute = false # this test relies on the output files from ver-1dd, so it shouldn't be run twice
  csvdiff = ver-1dd_out.csv
  prereq = ver-1dd
  requirement = 'The system shall be able to model a breakthrough problem without traps, and generate CSV data for use in comparisons with the analytic solution.'
[]


[ver-1d_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1dd.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solutions of verification cases 1dd, modeling a breakthrough problem without traps.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[ver-1dd_csvdiff-components]
  type = CSVDiff
  input = ver-1dd-components.i
  # To make it run at the end
  prereq = 'ver-1d_comparison'
  csvdiff = 'ver-1dd-components_out.csv'
  requirement = 'The system shall be able to model a breakthrough problem without traps using the Physics and Components shorthand syntax to generate CSV data for use in comparisons with the analytic solution.'
[]


[ver-1dd-components]
  type = Exodiff
  input = ver-1dd-components.i
  should_execute = false
  # To make it run at the end
  prereq = 'ver-1dd_csvdiff-components'
  exodiff = 'ver-1dd-components_out.e'
  requirement = 'The system shall be able to model a breakthrough problem without traps using the Physics and Components shorthand syntax.'
[]


[ver-1jb_csvdiff]
  type = CSVDiff
  input = ver-1jb.i
  csvdiff = ver-1jb_time_dependent_out.csv
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps, with the fine mesh and timestep required to match the analytical solution to generate CSV
                   data for use in comparisons with the analytic solution.'
[]


[ver-1jb_csvdiff_profile]
  type = CSVDiff
  input = ver-1jb.i
  csvdiff = ver-1jb_profile_out_line_0048.csv
  should_execute = false # uses ver-1jb_csvdiff
  prereq = ver-1jb_csvdiff
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps and output the profiles of concentrations.'
[]


[ver-1jb_csvdiff_equivalent_concentrations]
  type = CSVDiff
  input = ver-1jb.i
  cli_args = 'tritium_mobile_concentration_initial=1e25
                trap_per_free=1
                Outputs/file_base=ver-1jb_equivalent_concentrations_out
                Outputs/time_dependent_out/file_base=ver-1jb_equivalent_concentrations_time_dependent_out
                Outputs/profile_out/file_base=ver-1jb_equivalent_concentrations_profile_out'
  csvdiff = ver-1jb_equivalent_concentrations_time_dependent_out.csv
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps with equivalent initial mobile and trapped tritium concentration,
                   with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in
                   comparisons with the analytic solution.'
[]


[ver-1jb_csvdiff_profile_equivalent_concentrations]
  type = CSVDiff
  input = ver-1jb.i
  cli_args = 'tritium_mobile_concentration_initial=1e25
                trap_per_free=1
                Outputs/file_base=ver-1jb_equivalent_concentrations_out
                Outputs/time_dependent_out/file_base=ver-1jb_equivalent_concentrations_time_dependent_out
                Outputs/profile_out/file_base=ver-1jb_equivalent_concentrations_profile_out'
  csvdiff = ver-1jb_equivalent_concentrations_profile_out_line_0048.csv
  should_execute = false # uses ver-1jb_csvdiff_equivalent_concentrations
  prereq = ver-1jb_csvdiff_equivalent_concentrations
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps with equivalent initial mobile and trapped tritium concentration and output the
                   profiles of concentrations.'
[]


[ver-1jb_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1jb.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution
                   when modeling decay of tritium and associated growth of He in a diffusion segment with distributed traps.'
  required_python_packages = 'csv matplotlib numpy pandas os'
[]


[val-2d_csvdiff]
  type = CSVDiff
  input = 'val-2d.i'
  cli_args = 'Mesh/active=cartesian_mesh_coarse Postprocessors/max_time_step_size/function=max_dt_size_function_coarse Executioner/nl_rel_tol=8e-9 Outputs/file_base=val-2d_limited_out'
  csvdiff = val-2d_limited_out.csv
  requirement = 'The system shall be able to model thermal desorption spectroscopy on Tungsten.'
[]


[val-2d_exodiff]
  type = Exodiff
  input = 'val-2d.i'
  cli_args = 'Mesh/active=cartesian_mesh_coarse Postprocessors/max_time_step_size/function=max_dt_size_function_coarse Executioner/nl_rel_tol=8e-9 Outputs/file_base=val-2d_limited_out'
  exodiff = val-2d_limited_out.e
  prereq = val-2d_csvdiff
  should_execute = false # this test relies on the output files from val-2d_csvdiff, so it shouldn't be run twice
  requirement = 'The system shall be able to model thermal desorption spectroscopy on Tungsten to include full set of simulation outputs, including tritium concentration, diffusion flux, and trapping properties.'
[]


[val-2d_heavy_csvdiff]
  type = CSVDiff
  input = 'val-2d.i'
  csvdiff = val-2d_out.csv
  heavy = true
  requirement = 'The system shall be able to model thermal desorption spectroscopy on Tungsten with fine mesh and time step to compare with the desorption flux from experiment results.'
[]


[val-2d_heavy_exodiff]
  type = Exodiff
  input = 'val-2d.i'
  exodiff = val-2d_out.e
  prereq = val-2d_csvdiff
  heavy = true
  should_execute = false # this test relies on the output files from val-2d_csvdiff, so it shouldn't be run twice
  requirement = 'The system shall be able to model thermal desorption spectroscopy on Tungsten with fine mesh and time step to include full set of simulation outputs, including tritium concentration, diffusion flux, and trapping properties.'
[]


[val-2d_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2d.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of validation case 2d, modeling thermal desorption spectroscopy on Tungsten.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[val-2ea_csvdiff]
  type = CSVDiff
  input = val-2ea.i
  csvdiff = val-2ea_out.csv
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.05 mm thick membrane at 825 K to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2ea]
  type = Exodiff
  input = val-2ea.i
  prereq = val-2ea_csvdiff
  should_execute = False # this test relies on the output files from val-2ea_csvdiff, so it shouldn't be run twice
  exodiff = val-2ea_out.e
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.05 mm thick membrane at 825 K.'
[]


[val-2eb_csvdiff]
  type = CSVDiff
  input = val-2ea.i
  csvdiff = val-2eb_out.csv
  cli_args = 'slab_thickness="${units 2.5e-5 m -> mum}" file_name="val-2eb_out"'
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 825 K to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2eb]
  type = Exodiff
  input = val-2ea.i
  prereq = val-2eb_csvdiff
  should_execute = False # this test relies on the output files from val-2eb_csvdiff, so it shouldn't be run twice
  exodiff = val-2eb_out.e
  cli_args = 'slab_thickness="${units 2.5e-5 m -> mum}" file_name="val-2eb_out"'
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 825 K.'
[]


[val-2ec_csvdiff]
  type = CSVDiff
  input = val-2ea.i
  csvdiff = val-2ec_out.csv
  cli_args = 'temperature="${units 865 K}" slab_thickness="${units 2.5e-5 m -> mum}" file_name="val-2ec_out"'
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 865 K to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2ec]
  type = Exodiff
  input = val-2ea.i
  prereq = val-2ec_csvdiff
  should_execute = False # this test relies on the output files from val-2ec_csvdiff, so it shouldn't be run twice
  exodiff = val-2ec_out.e
  cli_args = 'temperature="${units 865 K}" slab_thickness="${units 2.5e-5 m -> mum}" file_name="val-2ec_out"'
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 865 K and generate an exodus file.'
[]


[val-2ed_csvdiff]
  type = CSVDiff
  input = val-2ed.i
  csvdiff = val-2ed_out.csv
  requirement = 'The system shall be able to model permeation of mixture gas from a 0.025 mm thin membrane at 870 K using lawdep boundary conditions to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2ed]
  type = Exodiff
  input = val-2ed.i
  prereq = val-2ed_csvdiff
  should_execute = False # this test relies on the output files from val-2ed_csvdiff, so it shouldn't be run twice
  exodiff = val-2ed_out.e
  requirement = 'The system shall be able to model permeation of mixture gas with chemical reaction from a  0.025 mm thin membrane at 870 K using lawdep boundary conditions and generate an exodus file.'
[]


[val-2ee_csvdiff]
  type = CSVDiff
  input = val-2ee.i
  csvdiff = val-2ee_out.csv
  requirement = 'The system shall be able to model permeation of mixture gas from a 0.025 mm thin membrane at 870 K using ratedep boundary conditions to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2ee]
  type = Exodiff
  input = val-2ee.i
  prereq = val-2ee_csvdiff
  should_execute = False # this test relies on the output files from val-2ee_csvdiff, so it shouldn't be run twice
  exodiff = val-2ee_out.e
  requirement = 'The system shall be able to model permeation of mixture gas with chemical reaction from a 0.025 mm thin membrane at 870 K using ratedep boundary conditions and generate an exodus file.'
[]


[ver-2e_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2e.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and experimental data of validation case 2e, modeling the permeation of Deuterium from a membrane.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[ver-1ja_csvdiff]
  type = CSVDiff
  input = ver-1ja.i
  csvdiff = ver-1ja_out.csv
  requirement = 'The system shall be able to model decay of tritium and associated growth of helium in a diffusion segment and generate CSV data for use in comparisons with the analytic solution.'
[]


[ver-1ja_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1ja.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1ja, which models decay of tritium and associated growth of helium in a diffusion segment.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[ver-1jb_csvdiff]
  type = CSVDiff
  input = ver-1jb.i
  csvdiff = ver-1jb_time_dependent_out.csv
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps, with the fine mesh and timestep required to match the analytical solution to generate CSV
                   data for use in comparisons with the analytic solution.'
[]


[ver-1jb_csvdiff_profile]
  type = CSVDiff
  input = ver-1jb.i
  csvdiff = ver-1jb_profile_out_line_0048.csv
  should_execute = false # uses ver-1jb_csvdiff
  prereq = ver-1jb_csvdiff
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps and output the profiles of concentrations.'
[]


[ver-1jb_csvdiff_equivalent_concentrations]
  type = CSVDiff
  input = ver-1jb.i
  cli_args = 'tritium_mobile_concentration_initial=1e25
                trap_per_free=1
                Outputs/file_base=ver-1jb_equivalent_concentrations_out
                Outputs/time_dependent_out/file_base=ver-1jb_equivalent_concentrations_time_dependent_out
                Outputs/profile_out/file_base=ver-1jb_equivalent_concentrations_profile_out'
  csvdiff = ver-1jb_equivalent_concentrations_time_dependent_out.csv
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps with equivalent initial mobile and trapped tritium concentration,
                   with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in
                   comparisons with the analytic solution.'
[]


[ver-1jb_csvdiff_profile_equivalent_concentrations]
  type = CSVDiff
  input = ver-1jb.i
  cli_args = 'tritium_mobile_concentration_initial=1e25
                trap_per_free=1
                Outputs/file_base=ver-1jb_equivalent_concentrations_out
                Outputs/time_dependent_out/file_base=ver-1jb_equivalent_concentrations_time_dependent_out
                Outputs/profile_out/file_base=ver-1jb_equivalent_concentrations_profile_out'
  csvdiff = ver-1jb_equivalent_concentrations_profile_out_line_0048.csv
  should_execute = false # uses ver-1jb_csvdiff_equivalent_concentrations
  prereq = ver-1jb_csvdiff_equivalent_concentrations
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps with equivalent initial mobile and trapped tritium concentration and output the
                   profiles of concentrations.'
[]


[ver-1jb_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1jb.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution
                   when modeling decay of tritium and associated growth of He in a diffusion segment with distributed traps.'
  required_python_packages = 'csv matplotlib numpy pandas os'
[]


[val-2ea_csvdiff]
  type = CSVDiff
  input = val-2ea.i
  csvdiff = val-2ea_out.csv
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.05 mm thick membrane at 825 K to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2ea]
  type = Exodiff
  input = val-2ea.i
  prereq = val-2ea_csvdiff
  should_execute = False # this test relies on the output files from val-2ea_csvdiff, so it shouldn't be run twice
  exodiff = val-2ea_out.e
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.05 mm thick membrane at 825 K.'
[]


[val-2eb_csvdiff]
  type = CSVDiff
  input = val-2ea.i
  csvdiff = val-2eb_out.csv
  cli_args = 'slab_thickness="${units 2.5e-5 m -> mum}" file_name="val-2eb_out"'
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 825 K to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2eb]
  type = Exodiff
  input = val-2ea.i
  prereq = val-2eb_csvdiff
  should_execute = False # this test relies on the output files from val-2eb_csvdiff, so it shouldn't be run twice
  exodiff = val-2eb_out.e
  cli_args = 'slab_thickness="${units 2.5e-5 m -> mum}" file_name="val-2eb_out"'
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 825 K.'
[]


[val-2ec_csvdiff]
  type = CSVDiff
  input = val-2ea.i
  csvdiff = val-2ec_out.csv
  cli_args = 'temperature="${units 865 K}" slab_thickness="${units 2.5e-5 m -> mum}" file_name="val-2ec_out"'
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 865 K to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2ec]
  type = Exodiff
  input = val-2ea.i
  prereq = val-2ec_csvdiff
  should_execute = False # this test relies on the output files from val-2ec_csvdiff, so it shouldn't be run twice
  exodiff = val-2ec_out.e
  cli_args = 'temperature="${units 865 K}" slab_thickness="${units 2.5e-5 m -> mum}" file_name="val-2ec_out"'
  requirement = 'The system shall be able to model permeation of Deuterium from a 0.025 mm thin membrane at 865 K and generate an exodus file.'
[]


[val-2ed_csvdiff]
  type = CSVDiff
  input = val-2ed.i
  csvdiff = val-2ed_out.csv
  requirement = 'The system shall be able to model permeation of mixture gas from a 0.025 mm thin membrane at 870 K using lawdep boundary conditions to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2ed]
  type = Exodiff
  input = val-2ed.i
  prereq = val-2ed_csvdiff
  should_execute = False # this test relies on the output files from val-2ed_csvdiff, so it shouldn't be run twice
  exodiff = val-2ed_out.e
  requirement = 'The system shall be able to model permeation of mixture gas with chemical reaction from a  0.025 mm thin membrane at 870 K using lawdep boundary conditions and generate an exodus file.'
[]


[val-2ee_csvdiff]
  type = CSVDiff
  input = val-2ee.i
  csvdiff = val-2ee_out.csv
  requirement = 'The system shall be able to model permeation of mixture gas from a 0.025 mm thin membrane at 870 K using ratedep boundary conditions to generate CSV data for use in comparisons with the experimental data.'
[]


[val-2ee]
  type = Exodiff
  input = val-2ee.i
  prereq = val-2ee_csvdiff
  should_execute = False # this test relies on the output files from val-2ee_csvdiff, so it shouldn't be run twice
  exodiff = val-2ee_out.e
  requirement = 'The system shall be able to model permeation of mixture gas with chemical reaction from a 0.025 mm thin membrane at 870 K using ratedep boundary conditions and generate an exodus file.'
[]


[ver-2e_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2e.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and experimental data of validation case 2e, modeling the permeation of Deuterium from a membrane.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[val-2f_light_csv]
  type = CSVDiff
  input = val-2f.i
  cli_args = "sample_thickness='${units 0.9e-4 m -> mum}'
                ix1=8 ix2=8 ix3=8 ix4=8 ix5=8
                dt_init=2e-3
                charge_time='${units 1e-1 s}' cooldown_duration='${units 1e-1 s}'
                Executioner/TimeStepper/timestep_limiting_postprocessor=max_time_step_size_coarse
                Outputs/csv/file_base=val-2f_light_out
                Outputs/exodus/file_base=val-2f_light_out
                Outputs/csv/start_time=0.2
                Executioner/TimeStepper/growth_factor=1.05
                Executioner/scheme=implicit-euler"
  csvdiff = val-2f_light_out.csv
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport and generate CSV data output with a short runtime and coarse mesh testing.'
  rel_err = 1e-3
  override_columns = 'scaled_flux_surface_right scaled_flux_surface_left scaled_mobile_deuterium'
  override_abs_zero = '1e4                      1e6                      1e7'
  override_rel_err = '1e-3                      1e-3                     1e-3'
  # Some relevant scales when considering diffs
  #
  # scaled_flux_surface_right          O(1e12)
  # scaled_flux_surface_left           O(1e19)
  # scaled_mobile_deuterium            O(1e13)
  # scaled_trapped_deuterium_intrinsic O(1e14)
[]


[val-2f_light_exodus]
  type = Exodiff
  input = val-2f.i
  exodiff = val-2f_light_out.e
  prereq = val-2f_light_csv
  should_execute = false # this test relies on the output files from val-2f_light_csv, so it shouldn't be run twice
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport with a short runtime and coarse mesh testing.'
  rel_err = 1e-3
  abs_zero = 1e-5
[]


[val-2f_heavy_csv_implicit-euler]
  type = CSVDiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/exodus/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/exodus/time_step_interval=400
                Outputs/csv/file_base=val-2f_heavy_desorption_out
                Outputs/exodus/file_base=val-2f_heavy_desorption_out
                Outputs/csv_temperature_history/file_base=val-2f_temperature_implicit_euler_out
                Executioner/scheme=implicit-euler"
  csvdiff = val-2f_heavy_desorption_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output. Only desorption phase data is compared with every other timestep.'
  max_time = 2000
[]


[val-2f_heavy_exodus_implicit-euler]
  type = Exodiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/exodus/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/exodus/time_step_interval=400
                Outputs/csv/file_base=val-2f_heavy_desorption_out
                Outputs/exodus/file_base=val-2f_heavy_desorption_out
                Outputs/csv_temperature_history/file_base=val-2f_temperature_implicit_euler_out
                Executioner/scheme=implicit-euler"
  exodiff = val-2f_heavy_desorption_out.e
  heavy = true
  prereq = val-2f_heavy_csv_implicit-euler
  should_execute = false # this test relies on the output files from val-2f_heavy_csv_implicit-euler, so it shouldn't be run twice
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability. Only desorption phase data is compared with every other timestep.'
[]


[val-2f_heavy_temperature_csv_implicit-euler]
  type = CSVDiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/exodus/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/exodus/time_step_interval=400
                Outputs/csv_temperature_history/file_base=val-2f_temperature_implicit_euler_out
                Executioner/scheme=implicit-euler"
  prereq = val-2f_heavy_csv_implicit-euler
  should_execute = false # this test relies on the output files from val-2f_heavy_csv_implicit-euler, so it shouldn't be run twice
  csvdiff = val-2f_temperature_implicit_euler_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output about the temperature for documentation plots.'
  max_time = 2000
[]


[val-2f_heavy_csv_inf_recombination_implicit-euler]
  type = CSVDiff
  input = val-2f.i
  cli_args = "ix1='${fparse 500}' ix4='${fparse 500}'
                AuxVariables/active='bounds_dummy temperature'
                BCs/active='left_concentration_sieverts right_concentration_sieverts'
                Physics/SpeciesTrapping/trapping_1/Ct0='trap_distribution_function_1_inf'
                Physics/SpeciesTrapping/trapping_2/Ct0='trap_distribution_function_2_inf'
                Physics/SpeciesTrapping/trapping_3/Ct0='trap_distribution_function_3_inf'
                Physics/SpeciesTrapping/trapping_4/Ct0='trap_distribution_function_4_inf'
                Physics/SpeciesTrapping/trapping_5/Ct0='trap_distribution_function_5_inf'
                Materials/active='diffusivity_W_func diffusivity_nonAD'
                Postprocessors/active='integral_source_deuterium scaled_implanted_deuterium integral_deuterium_concentration scaled_mobile_deuterium flux_surface_left_sieverts scaled_flux_surface_left_sieverts flux_surface_right_sieverts scaled_flux_surface_right_sieverts temperature_pps max_time_step_size max_time_step_size_coarse integral_trapped_concentration_1 scaled_trapped_deuterium_1 integral_trapped_concentration_2 scaled_trapped_deuterium_2 integral_trapped_concentration_3 scaled_trapped_deuterium_3 integral_trapped_concentration_4 scaled_trapped_deuterium_4 integral_trapped_concentration_5 scaled_trapped_deuterium_5 integral_trapped_concentration_intrinsic scaled_trapped_deuterium_intrinsic'
                Postprocessors/max_time_step_size/function=max_dt_size_function_inf
                Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/csv/file_base=val-2f_heavy_desorption_inf_recombination_out
                Outputs/exodus/file_base=val-2f_heavy_desorption_inf_recombination_out
                Executioner/abort_on_solve_fail=false
                Executioner/nl_abs_tol=5e-4
                Executioner/scheme=implicit-euler"
  csvdiff = val-2f_heavy_desorption_inf_recombination_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output, for the infinite recombination case. Only desorption phase data is compared with every other timestep.'
  max_time = 3600
[]


[val-2f_heavy_csv_bdf2]
  type = CSVDiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/sync_times='${fparse charge_time_hat + cooldown_duration_hat}'"
  csvdiff = val-2f_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output.'
  max_time = 2000
  rel_err = 1e-4
  override_columns = 'scaled_flux_surface_right scaled_flux_surface_left scaled_mobile_deuterium scaled_trapped_deuterium_1 scaled_trapped_deuterium_2'
  override_abs_zero = '1e4                      1e6                      1e4                     1e9                        1e4'
  override_rel_err = '5e-3                      1e-3                     9e-3                    5e-3                       5e-3'
[]


[val-2f_heavy_csv_inf_recombination_bdf2]
  type = CSVDiff
  input = val-2f.i
  cli_args = "ix1='${fparse 500}' ix4='${fparse 500}'
                AuxVariables/active='bounds_dummy temperature'
                BCs/active='left_concentration_sieverts right_concentration_sieverts'
                Physics/SpeciesTrapping/trapping_1/Ct0='trap_distribution_function_1_inf'
                Physics/SpeciesTrapping/trapping_2/Ct0='trap_distribution_function_2_inf'
                Physics/SpeciesTrapping/trapping_3/Ct0='trap_distribution_function_3_inf'
                Physics/SpeciesTrapping/trapping_4/Ct0='trap_distribution_function_4_inf'
                Physics/SpeciesTrapping/trapping_5/Ct0='trap_distribution_function_5_inf'
                Materials/active='diffusivity_W_func diffusivity_nonAD'
                Postprocessors/active='integral_source_deuterium scaled_implanted_deuterium integral_deuterium_concentration scaled_mobile_deuterium flux_surface_left_sieverts scaled_flux_surface_left_sieverts flux_surface_right_sieverts scaled_flux_surface_right_sieverts temperature_pps diffusion_W_hat diffusion_W max_time_step_size max_time_step_size_coarse integral_trapped_concentration_1 scaled_trapped_deuterium_1 integral_trapped_concentration_2 scaled_trapped_deuterium_2 integral_trapped_concentration_3 scaled_trapped_deuterium_3 integral_trapped_concentration_4 scaled_trapped_deuterium_4 integral_trapped_concentration_5 scaled_trapped_deuterium_5 integral_trapped_concentration_intrinsic scaled_trapped_deuterium_intrinsic spatial_max_mobile_d2 spatial_max_trapped_1 spatial_max_trapped_2 spatial_max_trapped_3 spatial_max_trapped_4 spatial_max_trapped_5 spatial_max_trapped_intrinsic max_mobile_d2 max_trapped_1 max_trapped_2 max_trapped_3 max_trapped_4 max_trapped_5 max_trapped_intrinsic max_scaled_flux_surface_left_sieverts max_scaled_flux_surface_right_sieverts max_scaled_mobile_deuterium max_scaled_trapped_deuterium_intrinsic'
                Postprocessors/max_time_step_size/function=max_dt_size_function_inf
                Outputs/csv/file_base='val-2f_out_inf_recombination'
                Outputs/exodus/file_base='val-2f_out_inf_recombination'
                Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/sync_times='${fparse charge_time_hat + cooldown_duration_hat}'
                Executioner/abort_on_solve_fail=false
                Executioner/nl_abs_tol=5e-4"
  csvdiff = val-2f_out_inf_recombination.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output, for the infinite recombination case.'
  max_time = 3600
  rel_err = 1e-5
  abs_zero = 1e4
  override_columns = 'scaled_flux_surface_right_sieverts scaled_flux_surface_left_sieverts scaled_mobile_deuterium scaled_trapped_deuterium_1 scaled_trapped_deuterium_2 scaled_trapped_deuterium_3 scaled_trapped_deuterium_4 scaled_trapped_deuterium_5'
  override_abs_zero = '1e6                               1e9                               1e6                     1e9                        1e9                        1e9                        1e9                        1e10'
  override_rel_err = '1e-3                               3e-3                              5e-3                    1e-3                       1e-3                       3e-3                       1e-3                       5e-5'
[]


[val-2f_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2f.py'
  requirement = 'The system shall be able to generate comparison plots between simulated solutions and experimental data of validation case val-2f, modeling self-damaged tungsten effects on deuterium transport.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[val-2f_light_csv]
  type = CSVDiff
  input = val-2f.i
  cli_args = "sample_thickness='${units 0.9e-4 m -> mum}'
                ix1=8 ix2=8 ix3=8 ix4=8 ix5=8
                dt_init=2e-3
                charge_time='${units 1e-1 s}' cooldown_duration='${units 1e-1 s}'
                Executioner/TimeStepper/timestep_limiting_postprocessor=max_time_step_size_coarse
                Outputs/csv/file_base=val-2f_light_out
                Outputs/exodus/file_base=val-2f_light_out
                Outputs/csv/start_time=0.2
                Executioner/TimeStepper/growth_factor=1.05
                Executioner/scheme=implicit-euler"
  csvdiff = val-2f_light_out.csv
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport and generate CSV data output with a short runtime and coarse mesh testing.'
  rel_err = 1e-3
  override_columns = 'scaled_flux_surface_right scaled_flux_surface_left scaled_mobile_deuterium'
  override_abs_zero = '1e4                      1e6                      1e7'
  override_rel_err = '1e-3                      1e-3                     1e-3'
  # Some relevant scales when considering diffs
  #
  # scaled_flux_surface_right          O(1e12)
  # scaled_flux_surface_left           O(1e19)
  # scaled_mobile_deuterium            O(1e13)
  # scaled_trapped_deuterium_intrinsic O(1e14)
[]


[val-2f_light_exodus]
  type = Exodiff
  input = val-2f.i
  exodiff = val-2f_light_out.e
  prereq = val-2f_light_csv
  should_execute = false # this test relies on the output files from val-2f_light_csv, so it shouldn't be run twice
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport with a short runtime and coarse mesh testing.'
  rel_err = 1e-3
  abs_zero = 1e-5
[]


[val-2f_heavy_csv_implicit-euler]
  type = CSVDiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/exodus/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/exodus/time_step_interval=400
                Outputs/csv/file_base=val-2f_heavy_desorption_out
                Outputs/exodus/file_base=val-2f_heavy_desorption_out
                Outputs/csv_temperature_history/file_base=val-2f_temperature_implicit_euler_out
                Executioner/scheme=implicit-euler"
  csvdiff = val-2f_heavy_desorption_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output. Only desorption phase data is compared with every other timestep.'
  max_time = 2000
[]


[val-2f_heavy_exodus_implicit-euler]
  type = Exodiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/exodus/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/exodus/time_step_interval=400
                Outputs/csv/file_base=val-2f_heavy_desorption_out
                Outputs/exodus/file_base=val-2f_heavy_desorption_out
                Outputs/csv_temperature_history/file_base=val-2f_temperature_implicit_euler_out
                Executioner/scheme=implicit-euler"
  exodiff = val-2f_heavy_desorption_out.e
  heavy = true
  prereq = val-2f_heavy_csv_implicit-euler
  should_execute = false # this test relies on the output files from val-2f_heavy_csv_implicit-euler, so it shouldn't be run twice
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability. Only desorption phase data is compared with every other timestep.'
[]


[val-2f_heavy_temperature_csv_implicit-euler]
  type = CSVDiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/exodus/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/exodus/time_step_interval=400
                Outputs/csv_temperature_history/file_base=val-2f_temperature_implicit_euler_out
                Executioner/scheme=implicit-euler"
  prereq = val-2f_heavy_csv_implicit-euler
  should_execute = false # this test relies on the output files from val-2f_heavy_csv_implicit-euler, so it shouldn't be run twice
  csvdiff = val-2f_temperature_implicit_euler_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output about the temperature for documentation plots.'
  max_time = 2000
[]


[val-2f_heavy_csv_inf_recombination_implicit-euler]
  type = CSVDiff
  input = val-2f.i
  cli_args = "ix1='${fparse 500}' ix4='${fparse 500}'
                AuxVariables/active='bounds_dummy temperature'
                BCs/active='left_concentration_sieverts right_concentration_sieverts'
                Physics/SpeciesTrapping/trapping_1/Ct0='trap_distribution_function_1_inf'
                Physics/SpeciesTrapping/trapping_2/Ct0='trap_distribution_function_2_inf'
                Physics/SpeciesTrapping/trapping_3/Ct0='trap_distribution_function_3_inf'
                Physics/SpeciesTrapping/trapping_4/Ct0='trap_distribution_function_4_inf'
                Physics/SpeciesTrapping/trapping_5/Ct0='trap_distribution_function_5_inf'
                Materials/active='diffusivity_W_func diffusivity_nonAD'
                Postprocessors/active='integral_source_deuterium scaled_implanted_deuterium integral_deuterium_concentration scaled_mobile_deuterium flux_surface_left_sieverts scaled_flux_surface_left_sieverts flux_surface_right_sieverts scaled_flux_surface_right_sieverts temperature_pps max_time_step_size max_time_step_size_coarse integral_trapped_concentration_1 scaled_trapped_deuterium_1 integral_trapped_concentration_2 scaled_trapped_deuterium_2 integral_trapped_concentration_3 scaled_trapped_deuterium_3 integral_trapped_concentration_4 scaled_trapped_deuterium_4 integral_trapped_concentration_5 scaled_trapped_deuterium_5 integral_trapped_concentration_intrinsic scaled_trapped_deuterium_intrinsic'
                Postprocessors/max_time_step_size/function=max_dt_size_function_inf
                Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/time_step_interval=2
                Outputs/csv/file_base=val-2f_heavy_desorption_inf_recombination_out
                Outputs/exodus/file_base=val-2f_heavy_desorption_inf_recombination_out
                Executioner/abort_on_solve_fail=false
                Executioner/nl_abs_tol=5e-4
                Executioner/scheme=implicit-euler"
  csvdiff = val-2f_heavy_desorption_inf_recombination_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the implicit-euler time integration scheme for numerical stability and generate CSV data output, for the infinite recombination case. Only desorption phase data is compared with every other timestep.'
  max_time = 3600
[]


[val-2f_heavy_csv_bdf2]
  type = CSVDiff
  input = val-2f.i
  cli_args = "Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/sync_times='${fparse charge_time_hat + cooldown_duration_hat}'"
  csvdiff = val-2f_out.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output.'
  max_time = 2000
  rel_err = 1e-4
  override_columns = 'scaled_flux_surface_right scaled_flux_surface_left scaled_mobile_deuterium scaled_trapped_deuterium_1 scaled_trapped_deuterium_2'
  override_abs_zero = '1e4                      1e6                      1e4                     1e9                        1e4'
  override_rel_err = '5e-3                      1e-3                     9e-3                    5e-3                       5e-3'
[]


[val-2f_heavy_csv_inf_recombination_bdf2]
  type = CSVDiff
  input = val-2f.i
  cli_args = "ix1='${fparse 500}' ix4='${fparse 500}'
                AuxVariables/active='bounds_dummy temperature'
                BCs/active='left_concentration_sieverts right_concentration_sieverts'
                Physics/SpeciesTrapping/trapping_1/Ct0='trap_distribution_function_1_inf'
                Physics/SpeciesTrapping/trapping_2/Ct0='trap_distribution_function_2_inf'
                Physics/SpeciesTrapping/trapping_3/Ct0='trap_distribution_function_3_inf'
                Physics/SpeciesTrapping/trapping_4/Ct0='trap_distribution_function_4_inf'
                Physics/SpeciesTrapping/trapping_5/Ct0='trap_distribution_function_5_inf'
                Materials/active='diffusivity_W_func diffusivity_nonAD'
                Postprocessors/active='integral_source_deuterium scaled_implanted_deuterium integral_deuterium_concentration scaled_mobile_deuterium flux_surface_left_sieverts scaled_flux_surface_left_sieverts flux_surface_right_sieverts scaled_flux_surface_right_sieverts temperature_pps diffusion_W_hat diffusion_W max_time_step_size max_time_step_size_coarse integral_trapped_concentration_1 scaled_trapped_deuterium_1 integral_trapped_concentration_2 scaled_trapped_deuterium_2 integral_trapped_concentration_3 scaled_trapped_deuterium_3 integral_trapped_concentration_4 scaled_trapped_deuterium_4 integral_trapped_concentration_5 scaled_trapped_deuterium_5 integral_trapped_concentration_intrinsic scaled_trapped_deuterium_intrinsic spatial_max_mobile_d2 spatial_max_trapped_1 spatial_max_trapped_2 spatial_max_trapped_3 spatial_max_trapped_4 spatial_max_trapped_5 spatial_max_trapped_intrinsic max_mobile_d2 max_trapped_1 max_trapped_2 max_trapped_3 max_trapped_4 max_trapped_5 max_trapped_intrinsic max_scaled_flux_surface_left_sieverts max_scaled_flux_surface_right_sieverts max_scaled_mobile_deuterium max_scaled_trapped_deuterium_intrinsic'
                Postprocessors/max_time_step_size/function=max_dt_size_function_inf
                Outputs/csv/file_base='val-2f_out_inf_recombination'
                Outputs/exodus/file_base='val-2f_out_inf_recombination'
                Outputs/csv/start_time='${fparse charge_time_hat + cooldown_duration_hat}'
                Outputs/csv/sync_times='${fparse charge_time_hat + cooldown_duration_hat}'
                Executioner/abort_on_solve_fail=false
                Executioner/nl_abs_tol=5e-4"
  csvdiff = val-2f_out_inf_recombination.csv
  heavy = true
  requirement = 'The system shall be able to model self-damaged tungsten effects on deuterium transport using the bdf2 time integration scheme for accuracy and generate CSV data output, for the infinite recombination case.'
  max_time = 3600
  rel_err = 1e-5
  abs_zero = 1e4
  override_columns = 'scaled_flux_surface_right_sieverts scaled_flux_surface_left_sieverts scaled_mobile_deuterium scaled_trapped_deuterium_1 scaled_trapped_deuterium_2 scaled_trapped_deuterium_3 scaled_trapped_deuterium_4 scaled_trapped_deuterium_5'
  override_abs_zero = '1e6                               1e9                               1e6                     1e9                        1e9                        1e9                        1e9                        1e10'
  override_rel_err = '1e-3                               3e-3                              5e-3                    1e-3                       1e-3                       3e-3                       1e-3                       5e-5'
[]


[val-2f_comparison]
  type = RunCommand
  command = 'python3 comparison_val-2f.py'
  requirement = 'The system shall be able to generate comparison plots between simulated solutions and experimental data of validation case val-2f, modeling self-damaged tungsten effects on deuterium transport.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1a]
  type = Exodiff
  input = ver-1a.i
  exodiff = ver-1a_test_out.e
  cli_args = 'Executioner/dt=5 Mesh/nx=10 Outputs/file_base=ver-1a_test_out'
  requirement = 'The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure.'
[]


[ver-1a_csvdiff]
  type = CSVDiff
  input = ver-1a.i
  should_execute = False # this test relies on the output files from ver-1a, so it shouldn't be run twice
  csvdiff = ver-1a_test_out.csv
  cli_args = 'Executioner/dt=5 Mesh/nx=10 Outputs/file_base=ver-1a_test_out'
  requirement = 'The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1a
[]


[ver-1a-components]
  type = CSVDiff
  input = ver-1a-component.i
  # Note that the additional element prevents an exodiff comparison
  # with [ver-1a]
  csvdiff = ver-1a-component_csv.csv
  cli_args = 'Executioner/dt=5 ActionComponents/structure/nx=10'
  requirement = 'The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure using component syntax to generate CSV data for use in comparisons with the analytic solution.'
[]


[ver-1a_heavy]
  type = Exodiff
  input = ver-1a.i
  exodiff = ver-1a_out.e
  requirement = 'The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure, with the fine mesh and timestep required to match the analytical solution.'
  heavy = true
[]


[ver-1a_heavy_csvdiff]
  type = CSVDiff
  input = ver-1a.i
  should_execute = False # this test relies on the output files from ver-1a_heavy, so it shouldn't be run twice
  csvdiff = ver-1a_csv.csv
  requirement = 'The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.'
  heavy = true
  prereq = ver-1a_heavy
[]


[ver-1a_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1a.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1a, modeling species diffusion through a structure, originating from a depleting source enclosure.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[ver-1a]
  type = Exodiff
  input = ver-1a.i
  exodiff = ver-1a_test_out.e
  cli_args = 'Executioner/dt=5 Mesh/nx=10 Outputs/file_base=ver-1a_test_out'
  requirement = 'The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure.'
[]


[ver-1a_csvdiff]
  type = CSVDiff
  input = ver-1a.i
  should_execute = False # this test relies on the output files from ver-1a, so it shouldn't be run twice
  csvdiff = ver-1a_test_out.csv
  cli_args = 'Executioner/dt=5 Mesh/nx=10 Outputs/file_base=ver-1a_test_out'
  requirement = 'The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1a
[]


[ver-1a-components]
  type = CSVDiff
  input = ver-1a-component.i
  # Note that the additional element prevents an exodiff comparison
  # with [ver-1a]
  csvdiff = ver-1a-component_csv.csv
  cli_args = 'Executioner/dt=5 ActionComponents/structure/nx=10'
  requirement = 'The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure using component syntax to generate CSV data for use in comparisons with the analytic solution.'
[]


[ver-1a_heavy]
  type = Exodiff
  input = ver-1a.i
  exodiff = ver-1a_out.e
  requirement = 'The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure, with the fine mesh and timestep required to match the analytical solution.'
  heavy = true
[]


[ver-1a_heavy_csvdiff]
  type = CSVDiff
  input = ver-1a.i
  should_execute = False # this test relies on the output files from ver-1a_heavy, so it shouldn't be run twice
  csvdiff = ver-1a_csv.csv
  requirement = 'The system shall be able to model species diffusion through a structure, originating from a depleting source enclosure, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution.'
  heavy = true
  prereq = ver-1a_heavy
[]


[ver-1a_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1a.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1a, modeling species diffusion through a structure, originating from a depleting source enclosure.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[ver-1b]
  type = Exodiff
  input = ver-1b.i
  exodiff = ver-1b_test_out.e
  cli_args = 'Executioner/dt=10 node_num=100 Outputs/exodus/file_base=ver-1b_test_out Outputs/csv/file_base=ver-1b_test_out'
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source.'
[]


[ver-1b_csvdiff]
  type = CSVDiff
  input = ver-1b.i
  should_execute = False
  csvdiff = ver-1b_test_out.csv
  cli_args = 'Executioner/dt=10 node_num=100 Outputs/exodus/file_base=ver-1b_test_out Outputs/csv/file_base=ver-1b_test_out'
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source to generate CSV data for use in comparisons with the analytic solution over time.'
  prereq = ver-1b
[]


[ver-1b-components]
  type = Exodiff
  input = ver-1b-component.i
  exodiff = ver-1b-component_out.e
  cli_args = 'Executioner/dt=10 node_num=100 Outputs/exodus/file_base=ver-1b-component_out Outputs/csv/file_base=ver-1b-component_out'
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source using a Physics and Components syntax.'
[]


[ver-1b-components_csvdiff]
  type = CSVDiff
  input = ver-1b-component.i
  should_execute = False
  csvdiff = ver-1b-component_out.csv
  cli_args = 'Executioner/dt=10 node_num=100 Outputs/exodus/file_base=ver-1b-component_out Outputs/csv/file_base=ver-1b-component_out'
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source using a Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution over time.'
  prereq = ver-1b-components
[]


[ver-1b_heavy]
  type = Exodiff
  input = ver-1b.i
  exodiff = ver-1b_out.e
  heavy = true
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source with the fine mesh and time step required to match the analytical solution.'
[]


[ver-1b_heavy_csvdiff]
  type = CSVDiff
  input = ver-1b.i
  should_execute = False # this test relies on the output files from ver-1b_heavy, so it shouldn't be run twice
  csvdiff = ver-1b_csv.csv
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time.'
  heavy = true
  prereq = ver-1b_heavy
[]


[ver-1b_heavy_lineplot]
  type = CSVDiff
  input = ver-1b.i
  should_execute = False # this test relies on the output files from ver-1b_heavy, so it shouldn't be run twice
  csvdiff = ver-1b_vector_postproc_line_0250.csv
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration.'
  heavy = true
  prereq = ver-1b_heavy
[]


[ver-1b_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1b.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1b, modeling transient diffusion through a slab with a constant concentration boundary condition as the species source.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1c_TMAP4]
  type = Exodiff
  input = 'ver-1c.i'
  exodiff = ver-1c_tmap4.e
  cli_args = 'BCs/lhs/type=NeumannBC Outputs/file_base=ver-1c_tmap4'
  requirement = 'The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion with boundary conditions consistent with TMAP4.'
[]


[ver-1c_TMAP7]
  type = Exodiff
  input = 'ver-1c.i'
  exodiff = ver-1c_tmap7.e
  cli_args = 'BCs/lhs/type=DirichletBC Outputs/file_base=ver-1c_tmap7'
  requirement = 'The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion with boundary conditions consistent with TMAP7'
[]


[ver-1c-components]
  type = Exodiff
  input = 'ver-1c-component.i'
  exodiff = ver-1c-component_out.e
  requirement = 'The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion, using a Physics and Components syntax.'
  # Different preconditioning
  abs_zero = 1e-8
  capabilities = 'method=opt'
[]


[ver-1c_TMAP4_csvdiff]
  type = CSVDiff
  input = ver-1c.i
  should_execute = False # this test relies on the output files from ver-1c_TMAP4, so it shouldn't be run twice
  csvdiff = ver-1c_tmap4.csv
  requirement = 'The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion to generate CSV data for use in comparisons with the analytic solution over time for the TMAP4 verification case.'
  prereq = ver-1c_TMAP4
[]


[ver-1c_TMAP7_csvdiff]
  type = CSVDiff
  input = ver-1c.i
  should_execute = False # this test relies on the output files from ver-1c_TMAP7, so it shouldn't be run twice
  csvdiff = ver-1c_tmap7.csv
  requirement = 'The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion to generate CSV data for use in comparisons with the analytic solution over time for the TMAP7 verification case.'
  prereq = ver-1c_TMAP7
[]


[ver-1c-components_csvdiff]
  type = CSVDiff
  input = 'ver-1c-component.i'
  should_execute = False # this test relies on the output files from ver-1c-components, so it shouldn't be run twice
  csvdiff = ver-1c-component_csv.csv
  requirement = 'The system shall be able to model species permeation into an unloaded portion of a slab from a pre-loaded portion using a Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution over time for the TMAP7 verification case.'
  prereq = ver-1c-components
[]


[ver-1c_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1c.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1c, modeling species permeation into an unloaded portion of a slab from a pre-loaded portion for both the TMAP4 and TMAP7 verification cases.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1e]
  type = Exodiff
  input = ver-1e.i
  exodiff = ver-1e_test_exodus.e
  cli_args = 'Executioner/dt=0.2 Executioner/end_time=50 Outputs/exodus/file_base=ver-1e_test_exodus Outputs/csv/file_base=ver-1e_test_exodus'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source.'
  exodiff_opts = '-match_ids'
  map = False
[]


[ver-1e_csvdiff]
  type = CSVDiff
  input = ver-1e.i
  should_execute = False
  csvdiff = ver-1e_test_exodus.csv
  cli_args = 'Executioner/dt=0.2 Executioner/end_time=50 Outputs/exodus/file_base=ver-1e_test_exodus Outputs/csv/file_base=ver-1e_test_exodus'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1e
[]


[ver-1e-component]
  type = Exodiff
  input = ver-1e-component.i
  exodiff = ver-1e-component_test_exodus.e
  cli_args = 'Executioner/dt=0.2 Executioner/end_time=50 Outputs/exodus/file_base=ver-1e-component_test_exodus Outputs/csv/file_base=ver-1e-component_test_exodus'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, using the shorthand Physics and Components syntax.'
  # Very small dimensions
  exodiff_opts = '-match_ids'
  map = False
[]


[ver-1e-component_csvdiff]
  type = CSVDiff
  input = ver-1e-component.i
  should_execute = False
  csvdiff = ver-1e-component_test_exodus.csv
  cli_args = 'Executioner/dt=0.2 Executioner/end_time=50 Outputs/exodus/file_base=ver-1e-component_test_exodus Outputs/csv/file_base=ver-1e-component_test_exodus'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, using the shorthand Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1e-component
[]


[ver-1e_TMAP4_heavy]
  type = Exodiff
  input = ver-1e.i
  exodiff = TMAP4.e
  heavy = true
  cli_args = 'T_SiC=63e-6 D_ver=8e-6 Outputs/exodus/file_base=TMAP4 Outputs/csv/file_base=TMAP4 Outputs/vector_postproc/file_base=TMAP4_vector_postproc'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution for the TMAP4 verification case.'
  exodiff_opts = '-match_ids'
  map = False
[]


[ver-1e_TMAP7_heavy]
  type = Exodiff
  input = ver-1e.i
  exodiff = TMAP7.e
  heavy = true
  cli_args = 'T_SiC=66e-6 D_ver=15.75e-6 Outputs/exodus/file_base=TMAP7 Outputs/csv/file_base=TMAP7 Outputs/vector_postproc/file_base=TMAP7_vector_postproc'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution for the TMAP7 verification case.'
  exodiff_opts = '-match_ids'
  map = False
[]


[ver-1e_TMAP4_heavy_csvdiff]
  type = CSVDiff
  input = ver-1e.i
  should_execute = False # this test relies on the output files from ver-1e_TMAP4_heavy, so it shouldn't be run twice
  csvdiff = TMAP4.csv
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time for the TMAP4 verification case.'
  heavy = true
  prereq = ver-1e_TMAP4_heavy
[]


[ver-1e_TMAP7_heavy_csvdiff]
  type = CSVDiff
  input = ver-1e.i
  should_execute = False # this test relies on the output files from ver-1e_TMAP7_heavy, so it shouldn't be run twice
  csvdiff = TMAP7.csv
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time for the TMAP7 verification case.'
  heavy = true
  prereq = ver-1e_TMAP7_heavy
[]


[ver-1e_TMAP4_heavy_lineplot]
  type = CSVDiff
  input = ver-1e.i
  should_execute = False # this test relies on the output files from ver-1e_TMAP4_heavy, so it shouldn't be run twice
  csvdiff = TMAP4_vector_postproc_line_0548.csv
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration for the TMAP4 verification case.'
  heavy = true
  prereq = ver-1e_TMAP4_heavy
[]


[ver-1e_TMAP7_heavy_lineplot]
  type = CSVDiff
  input = ver-1e.i
  should_execute = False # this test relies on the output files from ver-1e_TMAP7_heavy, so it shouldn't be run twice
  csvdiff = TMAP7_vector_postproc_line_0548.csv
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration for the TMAP7 verification case.'
  heavy = true
  prereq = ver-1e_TMAP7_heavy
[]


[ver-1e_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1e.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1e, modeling transient diffusion through a composite slab with a constant concentration boundary condition as the species source for both the TMAP4 and TMAP7 verification cases.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1b]
  type = Exodiff
  input = ver-1b.i
  exodiff = ver-1b_test_out.e
  cli_args = 'Executioner/dt=10 node_num=100 Outputs/exodus/file_base=ver-1b_test_out Outputs/csv/file_base=ver-1b_test_out'
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source.'
[]


[ver-1b_csvdiff]
  type = CSVDiff
  input = ver-1b.i
  should_execute = False
  csvdiff = ver-1b_test_out.csv
  cli_args = 'Executioner/dt=10 node_num=100 Outputs/exodus/file_base=ver-1b_test_out Outputs/csv/file_base=ver-1b_test_out'
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source to generate CSV data for use in comparisons with the analytic solution over time.'
  prereq = ver-1b
[]


[ver-1b-components]
  type = Exodiff
  input = ver-1b-component.i
  exodiff = ver-1b-component_out.e
  cli_args = 'Executioner/dt=10 node_num=100 Outputs/exodus/file_base=ver-1b-component_out Outputs/csv/file_base=ver-1b-component_out'
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source using a Physics and Components syntax.'
[]


[ver-1b-components_csvdiff]
  type = CSVDiff
  input = ver-1b-component.i
  should_execute = False
  csvdiff = ver-1b-component_out.csv
  cli_args = 'Executioner/dt=10 node_num=100 Outputs/exodus/file_base=ver-1b-component_out Outputs/csv/file_base=ver-1b-component_out'
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source using a Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution over time.'
  prereq = ver-1b-components
[]


[ver-1b_heavy]
  type = Exodiff
  input = ver-1b.i
  exodiff = ver-1b_out.e
  heavy = true
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source with the fine mesh and time step required to match the analytical solution.'
[]


[ver-1b_heavy_csvdiff]
  type = CSVDiff
  input = ver-1b.i
  should_execute = False # this test relies on the output files from ver-1b_heavy, so it shouldn't be run twice
  csvdiff = ver-1b_csv.csv
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time.'
  heavy = true
  prereq = ver-1b_heavy
[]


[ver-1b_heavy_lineplot]
  type = CSVDiff
  input = ver-1b.i
  should_execute = False # this test relies on the output files from ver-1b_heavy, so it shouldn't be run twice
  csvdiff = ver-1b_vector_postproc_line_0250.csv
  requirement = 'The system shall be able to model transient diffusion through a slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration.'
  heavy = true
  prereq = ver-1b_heavy
[]


[ver-1b_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1b.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1b, modeling transient diffusion through a slab with a constant concentration boundary condition as the species source.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1e]
  type = Exodiff
  input = ver-1e.i
  exodiff = ver-1e_test_exodus.e
  cli_args = 'Executioner/dt=0.2 Executioner/end_time=50 Outputs/exodus/file_base=ver-1e_test_exodus Outputs/csv/file_base=ver-1e_test_exodus'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source.'
  exodiff_opts = '-match_ids'
  map = False
[]


[ver-1e_csvdiff]
  type = CSVDiff
  input = ver-1e.i
  should_execute = False
  csvdiff = ver-1e_test_exodus.csv
  cli_args = 'Executioner/dt=0.2 Executioner/end_time=50 Outputs/exodus/file_base=ver-1e_test_exodus Outputs/csv/file_base=ver-1e_test_exodus'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1e
[]


[ver-1e-component]
  type = Exodiff
  input = ver-1e-component.i
  exodiff = ver-1e-component_test_exodus.e
  cli_args = 'Executioner/dt=0.2 Executioner/end_time=50 Outputs/exodus/file_base=ver-1e-component_test_exodus Outputs/csv/file_base=ver-1e-component_test_exodus'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, using the shorthand Physics and Components syntax.'
  # Very small dimensions
  exodiff_opts = '-match_ids'
  map = False
[]


[ver-1e-component_csvdiff]
  type = CSVDiff
  input = ver-1e-component.i
  should_execute = False
  csvdiff = ver-1e-component_test_exodus.csv
  cli_args = 'Executioner/dt=0.2 Executioner/end_time=50 Outputs/exodus/file_base=ver-1e-component_test_exodus Outputs/csv/file_base=ver-1e-component_test_exodus'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, using the shorthand Physics and Components syntax to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1e-component
[]


[ver-1e_TMAP4_heavy]
  type = Exodiff
  input = ver-1e.i
  exodiff = TMAP4.e
  heavy = true
  cli_args = 'T_SiC=63e-6 D_ver=8e-6 Outputs/exodus/file_base=TMAP4 Outputs/csv/file_base=TMAP4 Outputs/vector_postproc/file_base=TMAP4_vector_postproc'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution for the TMAP4 verification case.'
  exodiff_opts = '-match_ids'
  map = False
[]


[ver-1e_TMAP7_heavy]
  type = Exodiff
  input = ver-1e.i
  exodiff = TMAP7.e
  heavy = true
  cli_args = 'T_SiC=66e-6 D_ver=15.75e-6 Outputs/exodus/file_base=TMAP7 Outputs/csv/file_base=TMAP7 Outputs/vector_postproc/file_base=TMAP7_vector_postproc'
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution for the TMAP7 verification case.'
  exodiff_opts = '-match_ids'
  map = False
[]


[ver-1e_TMAP4_heavy_csvdiff]
  type = CSVDiff
  input = ver-1e.i
  should_execute = False # this test relies on the output files from ver-1e_TMAP4_heavy, so it shouldn't be run twice
  csvdiff = TMAP4.csv
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time for the TMAP4 verification case.'
  heavy = true
  prereq = ver-1e_TMAP4_heavy
[]


[ver-1e_TMAP7_heavy_csvdiff]
  type = CSVDiff
  input = ver-1e.i
  should_execute = False # this test relies on the output files from ver-1e_TMAP7_heavy, so it shouldn't be run twice
  csvdiff = TMAP7.csv
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and time step required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution over time for the TMAP7 verification case.'
  heavy = true
  prereq = ver-1e_TMAP7_heavy
[]


[ver-1e_TMAP4_heavy_lineplot]
  type = CSVDiff
  input = ver-1e.i
  should_execute = False # this test relies on the output files from ver-1e_TMAP4_heavy, so it shouldn't be run twice
  csvdiff = TMAP4_vector_postproc_line_0548.csv
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration for the TMAP4 verification case.'
  heavy = true
  prereq = ver-1e_TMAP4_heavy
[]


[ver-1e_TMAP7_heavy_lineplot]
  type = CSVDiff
  input = ver-1e.i
  should_execute = False # this test relies on the output files from ver-1e_TMAP7_heavy, so it shouldn't be run twice
  csvdiff = TMAP7_vector_postproc_line_0548.csv
  requirement = 'The system shall be able to model transient diffusion through a composite slab with a constant concentration boundary condition as the species source, with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in comparisons with the analytic solution for the profile concentration for the TMAP7 verification case.'
  heavy = true
  prereq = ver-1e_TMAP7_heavy
[]


[ver-1e_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1e.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1e, modeling transient diffusion through a composite slab with a constant concentration boundary condition as the species source for both the TMAP4 and TMAP7 verification cases.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1fa-physics]
  type = Exodiff
  input = ver-1fa-physics.i
  exodiff = ver-1fa-physics_out.e
  requirement = 'The system shall be able to model heat conduction in a slab that has heat generation using the Component and Physics syntax.'
  verification = 'ver-1fa.md'
[]


[ver-1fa_lineplot]
  type = CSVDiff
  input = ver-1fa.i
  should_execute = False # this test relies on the output files from ver-1fa, so it shouldn't be run twice
  csvdiff = ver-1fa_csv_line_0011.csv
  requirement = 'The system shall be able to model heat conduction in a slab that has heat generation to generate CSV data for use in comparisons with the analytic solution for the profile concentration.'
  prereq = ver-1fa
[]


[ver-1fa-physics_lineplot_csvdiff]
  type = CSVDiff
  input = ver-1fa-physics.i
  should_execute = False # this test relies on the output files from ver-1fa-physics, so it shouldn't be run twice
  csvdiff = ver-1fa-physics_csv_line_0011.csv
  requirement = 'The system shall be able to model heat conduction in a slab that has heat generation using the Component and Physics syntax to generate CSV data for use in comparisons with the analytic solution for the profile concentration.'
  prereq = ver-1fa-physics
[]


[ver-1fa_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1fa.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1fa, to model heat conduction in a slab that has heat generation.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1fb]
  type = Exodiff
  input = ver-1fb.i
  exodiff = ver-1fb_out.e
  requirement = 'The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends'
[]


[ver-1fb_csvdiff_0pt1sec]
  type = CSVDiff
  input = ver-1fb.i
  csvdiff = ver-1fb_u_vs_x_line_0010.csv
  prereq = ver-1fb
  should_execute = False # this test relies on the output files from ver-1fb, so it shouldn't be run twice
  requirement = 'The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends to generate CSV data at time of 0.1 s for use in comparison with analytical solution.'
[]


[ver-1fb_csvdiff_0pt5sec]
  type = CSVDiff
  input = ver-1fb.i
  csvdiff = ver-1fb_u_vs_x_line_0050.csv
  prereq = ver-1fb
  should_execute = False # this test relies on the output files from ver-1fb, so it shouldn't be run twice
  requirement = 'The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends to generate CSV data at time of 0.5 s for use in comparison with analytical solution.'
[]


[ver-1fb_csvdiff_1pt0sec]
  type = CSVDiff
  input = ver-1fb.i
  csvdiff = ver-1fb_u_vs_x_line_0100.csv
  prereq = ver-1fb
  should_execute = False # this test relies on the output files from ver-1fb, so it shouldn't be run twice
  requirement = 'The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends to generate CSV data at time of 1.0 s for use in comparison with analytical solution.'
[]


[ver-1fb_csvdiff_5pt0sec]
  type = CSVDiff
  input = ver-1fb.i
  csvdiff = ver-1fb_u_vs_x_line_0500.csv
  prereq = ver-1fb
  should_execute = False # this test relies on the output files from ver-1fb, so it shouldn't be run twice
  requirement = 'The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends to generate CSV data at time of 5.0 s for use in comparison with analytical solution.'
[]


[ver-1fb_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1fb.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1fb, modeling thermal transient in a slab with fixed temperatures at both the ends.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[thermal_transient_physics]
  type = Exodiff
  input = ver-1fb-physics.i
  exodiff = ver-1fb-physics_out.e
  requirement = 'The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends using the component and physics syntax.'
  verification = 'ver-1fb.md'
[]


[thermal_transient_physics_csvdiff_0pt1sec]
  type = CSVDiff
  input = ver-1fb-physics.i
  csvdiff = ver-1fb-physics_u_vs_x_line_0010.csv
  prereq = thermal_transient_physics
  should_execute = False # this test relies on the output files from thermal_transient_physics, so it shouldn't be run twice
  requirement = 'The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends using the component and physics syntax to generate CSV data at time of 0.1 s for use in comparison with analytical solution.'
[]


[ver-1fc]
  type = Exodiff
  input = ver-1fc.i
  exodiff = ver-1fc_out.e
  requirement = 'The system shall be able to model conduction in a composite structure with constant surface temperatures.'
[]


[ver-1fc_csvdiff_transient]
  type = CSVDiff
  input = ver-1fc.i
  should_execute = False # this test relies on the output files from ver-1fc, so it shouldn't be run twice
  csvdiff = ver-1fc_temperature_at_x0.09.csv
  requirement = 'The system shall be able to model conduction in a composite structure with constant surface temperatures to generate CSV data for use in comparisons with ABAQUS during transient at x=0.09 m.'
  prereq = ver-1fc
[]


[ver-1fc_csvdiff_transient_profile]
  type = CSVDiff
  input = ver-1fc.i
  should_execute = False # this test relies on the output files from ver-1fc, so it shouldn't be run twice
  csvdiff = ver-1fc_vector_postproc_line_0032.csv
  requirement = 'The system shall be able to model conduction in a composite structure with constant surface temperatures to generate CSV data for use in comparisons with ABAQUS during transient at t=150 s.'
  prereq = ver-1fc
[]


[ver-1fc_csvdiff_steady_state]
  type = CSVDiff
  input = ver-1fc.i
  should_execute = False # this test relies on the output files from ver-1fc, so it shouldn't be run twice
  csvdiff = ver-1fc_vector_postproc_line_0063.csv
  requirement = 'The system shall be able to model conduction in a composite structure with constant surface temperatures to generate CSV data for use in comparisons with ABAQUS and an analytical solution at steady state (t=10000 s).'
  prereq = ver-1fc
[]


[ver-1fc_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1fc.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution, ABAQUS data, and simulated solution of verification case 1fc, modeling conduction in a composite structure with constant surface temperatures.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[ver-1fc-physics]
  type = Exodiff
  input = ver-1fc-physics.i
  exodiff = ver-1fc-physics_out.e
  requirement = 'The system shall be able to model conduction in a composite structure with constant surface temperatures using the Physics syntax.'
  prereq = 'ver-1fc_comparison'
[]


[ver-1fc-physics_csvdiff_transient_profile]
  type = CSVDiff
  input = ver-1fc-physics.i
  should_execute = False # this test relies on the output files from ver-1fc-physics, so it shouldn't be run twice
  csvdiff = ver-1fc-physics_vector_postproc_line_0032.csv
  requirement = 'The system shall be able to model conduction in a composite structure with constant surface temperatures using the Physics syntax to generate CSV data for use in comparisons with ABAQUS during transient at t=150 s.'
  prereq = ver-1fc-physics
[]


[ver-1fc-physics_csvdiff_steady_state]
  type = CSVDiff
  input = ver-1fc-physics.i
  should_execute = False # this test relies on the output files from ver-1fc-physics, so it shouldn't be run twice
  csvdiff = ver-1fc-physics_vector_postproc_line_0063.csv
  requirement = 'The system shall be able to model conduction in a composite structure with constant surface temperatures using the Physics syntax to generate CSV data for use in comparisons with ABAQUS and an analytical solution at steady state (t=10000 s).'
  prereq = ver-1fc-physics
[]


[ver-1fd-physics]
  type = Exodiff
  input = ver-1fd-physics.i
  exodiff = ver-1fd-physics_out.e
  requirement = 'The system shall be able to model convective heating using the shorthand Physics syntax.'
[]


[ver-1fd_csv]
  type = CSVDiff
  input = ver-1fd.i
  csvdiff = ver-1fd_out.csv
  should_execute = False # this test relies on the output files from ver-1fd, so it shouldn't be run twice
  requirement = 'The system shall be able to model convective heating to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1fd
[]


[ver-1fd-physics_csv]
  type = CSVDiff
  input = ver-1fd-physics.i
  should_execute = False
  csvdiff = ver-1fd-physics_out.csv
  requirement = 'The system shall be able to model convective heating using the shorthand Physics syntax to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1fd-physics
[]


[ver-1fd_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1fd.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1fd, modeling convective heating.'
  required_python_packages = 'matplotlib scipy numpy pandas os'
[]


[ver-1fa-physics]
  type = Exodiff
  input = ver-1fa-physics.i
  exodiff = ver-1fa-physics_out.e
  requirement = 'The system shall be able to model heat conduction in a slab that has heat generation using the Component and Physics syntax.'
  verification = 'ver-1fa.md'
[]


[ver-1fa_lineplot]
  type = CSVDiff
  input = ver-1fa.i
  should_execute = False # this test relies on the output files from ver-1fa, so it shouldn't be run twice
  csvdiff = ver-1fa_csv_line_0011.csv
  requirement = 'The system shall be able to model heat conduction in a slab that has heat generation to generate CSV data for use in comparisons with the analytic solution for the profile concentration.'
  prereq = ver-1fa
[]


[ver-1fa-physics_lineplot_csvdiff]
  type = CSVDiff
  input = ver-1fa-physics.i
  should_execute = False # this test relies on the output files from ver-1fa-physics, so it shouldn't be run twice
  csvdiff = ver-1fa-physics_csv_line_0011.csv
  requirement = 'The system shall be able to model heat conduction in a slab that has heat generation using the Component and Physics syntax to generate CSV data for use in comparisons with the analytic solution for the profile concentration.'
  prereq = ver-1fa-physics
[]


[ver-1fa_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1fa.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1fa, to model heat conduction in a slab that has heat generation.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1fb]
  type = Exodiff
  input = ver-1fb.i
  exodiff = ver-1fb_out.e
  requirement = 'The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends'
[]


[ver-1fb_csvdiff_0pt1sec]
  type = CSVDiff
  input = ver-1fb.i
  csvdiff = ver-1fb_u_vs_x_line_0010.csv
  prereq = ver-1fb
  should_execute = False # this test relies on the output files from ver-1fb, so it shouldn't be run twice
  requirement = 'The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends to generate CSV data at time of 0.1 s for use in comparison with analytical solution.'
[]


[ver-1fb_csvdiff_0pt5sec]
  type = CSVDiff
  input = ver-1fb.i
  csvdiff = ver-1fb_u_vs_x_line_0050.csv
  prereq = ver-1fb
  should_execute = False # this test relies on the output files from ver-1fb, so it shouldn't be run twice
  requirement = 'The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends to generate CSV data at time of 0.5 s for use in comparison with analytical solution.'
[]


[ver-1fb_csvdiff_1pt0sec]
  type = CSVDiff
  input = ver-1fb.i
  csvdiff = ver-1fb_u_vs_x_line_0100.csv
  prereq = ver-1fb
  should_execute = False # this test relies on the output files from ver-1fb, so it shouldn't be run twice
  requirement = 'The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends to generate CSV data at time of 1.0 s for use in comparison with analytical solution.'
[]


[ver-1fb_csvdiff_5pt0sec]
  type = CSVDiff
  input = ver-1fb.i
  csvdiff = ver-1fb_u_vs_x_line_0500.csv
  prereq = ver-1fb
  should_execute = False # this test relies on the output files from ver-1fb, so it shouldn't be run twice
  requirement = 'The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends to generate CSV data at time of 5.0 s for use in comparison with analytical solution.'
[]


[ver-1fb_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1fb.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1fb, modeling thermal transient in a slab with fixed temperatures at both the ends.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[thermal_transient_physics]
  type = Exodiff
  input = ver-1fb-physics.i
  exodiff = ver-1fb-physics_out.e
  requirement = 'The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends using the component and physics syntax.'
  verification = 'ver-1fb.md'
[]


[thermal_transient_physics_csvdiff_0pt1sec]
  type = CSVDiff
  input = ver-1fb-physics.i
  csvdiff = ver-1fb-physics_u_vs_x_line_0010.csv
  prereq = thermal_transient_physics
  should_execute = False # this test relies on the output files from thermal_transient_physics, so it shouldn't be run twice
  requirement = 'The system shall be able to model thermal transient in a slab that has temperatures fixed at both the ends using the component and physics syntax to generate CSV data at time of 0.1 s for use in comparison with analytical solution.'
[]


[ver-1fc]
  type = Exodiff
  input = ver-1fc.i
  exodiff = ver-1fc_out.e
  requirement = 'The system shall be able to model conduction in a composite structure with constant surface temperatures.'
[]


[ver-1fc_csvdiff_transient]
  type = CSVDiff
  input = ver-1fc.i
  should_execute = False # this test relies on the output files from ver-1fc, so it shouldn't be run twice
  csvdiff = ver-1fc_temperature_at_x0.09.csv
  requirement = 'The system shall be able to model conduction in a composite structure with constant surface temperatures to generate CSV data for use in comparisons with ABAQUS during transient at x=0.09 m.'
  prereq = ver-1fc
[]


[ver-1fc_csvdiff_transient_profile]
  type = CSVDiff
  input = ver-1fc.i
  should_execute = False # this test relies on the output files from ver-1fc, so it shouldn't be run twice
  csvdiff = ver-1fc_vector_postproc_line_0032.csv
  requirement = 'The system shall be able to model conduction in a composite structure with constant surface temperatures to generate CSV data for use in comparisons with ABAQUS during transient at t=150 s.'
  prereq = ver-1fc
[]


[ver-1fc_csvdiff_steady_state]
  type = CSVDiff
  input = ver-1fc.i
  should_execute = False # this test relies on the output files from ver-1fc, so it shouldn't be run twice
  csvdiff = ver-1fc_vector_postproc_line_0063.csv
  requirement = 'The system shall be able to model conduction in a composite structure with constant surface temperatures to generate CSV data for use in comparisons with ABAQUS and an analytical solution at steady state (t=10000 s).'
  prereq = ver-1fc
[]


[ver-1fc_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1fc.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution, ABAQUS data, and simulated solution of verification case 1fc, modeling conduction in a composite structure with constant surface temperatures.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[ver-1fc-physics]
  type = Exodiff
  input = ver-1fc-physics.i
  exodiff = ver-1fc-physics_out.e
  requirement = 'The system shall be able to model conduction in a composite structure with constant surface temperatures using the Physics syntax.'
  prereq = 'ver-1fc_comparison'
[]


[ver-1fc-physics_csvdiff_transient_profile]
  type = CSVDiff
  input = ver-1fc-physics.i
  should_execute = False # this test relies on the output files from ver-1fc-physics, so it shouldn't be run twice
  csvdiff = ver-1fc-physics_vector_postproc_line_0032.csv
  requirement = 'The system shall be able to model conduction in a composite structure with constant surface temperatures using the Physics syntax to generate CSV data for use in comparisons with ABAQUS during transient at t=150 s.'
  prereq = ver-1fc-physics
[]


[ver-1fc-physics_csvdiff_steady_state]
  type = CSVDiff
  input = ver-1fc-physics.i
  should_execute = False # this test relies on the output files from ver-1fc-physics, so it shouldn't be run twice
  csvdiff = ver-1fc-physics_vector_postproc_line_0063.csv
  requirement = 'The system shall be able to model conduction in a composite structure with constant surface temperatures using the Physics syntax to generate CSV data for use in comparisons with ABAQUS and an analytical solution at steady state (t=10000 s).'
  prereq = ver-1fc-physics
[]


[ver-1fd-physics]
  type = Exodiff
  input = ver-1fd-physics.i
  exodiff = ver-1fd-physics_out.e
  requirement = 'The system shall be able to model convective heating using the shorthand Physics syntax.'
[]


[ver-1fd_csv]
  type = CSVDiff
  input = ver-1fd.i
  csvdiff = ver-1fd_out.csv
  should_execute = False # this test relies on the output files from ver-1fd, so it shouldn't be run twice
  requirement = 'The system shall be able to model convective heating to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1fd
[]


[ver-1fd-physics_csv]
  type = CSVDiff
  input = ver-1fd-physics.i
  should_execute = False
  csvdiff = ver-1fd-physics_out.csv
  requirement = 'The system shall be able to model convective heating using the shorthand Physics syntax to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1fd-physics
[]


[ver-1fd_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1fd.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1fd, modeling convective heating.'
  required_python_packages = 'matplotlib scipy numpy pandas os'
[]


[ver-1fa-physics]
  type = Exodiff
  input = ver-1fa-physics.i
  exodiff = ver-1fa-physics_out.e
  requirement = 'The system shall be able to model heat conduction in a slab that has heat generation using the Component and Physics syntax.'
  verification = 'ver-1fa.md'
[]


[ver-1fa_lineplot]
  type = CSVDiff
  input = ver-1fa.i
  should_execute = False # this test relies on the output files from ver-1fa, so it shouldn't be run twice
  csvdiff = ver-1fa_csv_line_0011.csv
  requirement = 'The system shall be able to model heat conduction in a slab that has heat generation to generate CSV data for use in comparisons with the analytic solution for the profile concentration.'
  prereq = ver-1fa
[]


[ver-1fa-physics_lineplot_csvdiff]
  type = CSVDiff
  input = ver-1fa-physics.i
  should_execute = False # this test relies on the output files from ver-1fa-physics, so it shouldn't be run twice
  csvdiff = ver-1fa-physics_csv_line_0011.csv
  requirement = 'The system shall be able to model heat conduction in a slab that has heat generation using the Component and Physics syntax to generate CSV data for use in comparisons with the analytic solution for the profile concentration.'
  prereq = ver-1fa-physics
[]


[ver-1fa_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1fa.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1fa, to model heat conduction in a slab that has heat generation.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1ha_csv]
  type = CSVDiff
  input = 'ver-1ha.i'
  csvdiff = ver-1ha_out.csv
  requirement = 'The system shall be able to model a convective outflow problem and calculate the pressure and concentration of the gas in the second and third enclosure and to generate CSV data for use in comparisons with the analytic solution over time.'
[]


[ver-1ha_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1ha.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of a convective outflow problem involving three enclosures and calculate the pressure and concentration of the gas in the second and third enclosure.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[ver-1hb_csv]
  type = CSVDiff
  input = 'ver-1hb.i'
  csvdiff = ver-1hb_out.csv
  requirement = 'The system shall be able to model a convective outflow problem and calculate the pressure and concentration of tritium and deuterium gas in the first and second enclosure and to generate CSV data for use in comparisons with the analytic solution over time.'
[]


[ver-1hb_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1hb.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of a convective outflow problem involving two enclosures and two different gases and calculate the pressure and concentration of the gases in the enclosures.'
  prereq = 'ver-1hb_csv'
  required_python_packages = 'csv matplotlib numpy pandas scipy os math'
[]


[ver-1ja_csvdiff]
  type = CSVDiff
  input = ver-1ja.i
  csvdiff = ver-1ja_out.csv
  requirement = 'The system shall be able to model decay of tritium and associated growth of helium in a diffusion segment and generate CSV data for use in comparisons with the analytic solution.'
[]


[ver-1ja_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1ja.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1ja, which models decay of tritium and associated growth of helium in a diffusion segment.'
  required_python_packages = 'matplotlib numpy pandas os'
[]


[ver-1jb_csvdiff]
  type = CSVDiff
  input = ver-1jb.i
  csvdiff = ver-1jb_time_dependent_out.csv
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps, with the fine mesh and timestep required to match the analytical solution to generate CSV
                   data for use in comparisons with the analytic solution.'
[]


[ver-1jb_csvdiff_profile]
  type = CSVDiff
  input = ver-1jb.i
  csvdiff = ver-1jb_profile_out_line_0048.csv
  should_execute = false # uses ver-1jb_csvdiff
  prereq = ver-1jb_csvdiff
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps and output the profiles of concentrations.'
[]


[ver-1jb_csvdiff_equivalent_concentrations]
  type = CSVDiff
  input = ver-1jb.i
  cli_args = 'tritium_mobile_concentration_initial=1e25
                trap_per_free=1
                Outputs/file_base=ver-1jb_equivalent_concentrations_out
                Outputs/time_dependent_out/file_base=ver-1jb_equivalent_concentrations_time_dependent_out
                Outputs/profile_out/file_base=ver-1jb_equivalent_concentrations_profile_out'
  csvdiff = ver-1jb_equivalent_concentrations_time_dependent_out.csv
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps with equivalent initial mobile and trapped tritium concentration,
                   with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in
                   comparisons with the analytic solution.'
[]


[ver-1jb_csvdiff_profile_equivalent_concentrations]
  type = CSVDiff
  input = ver-1jb.i
  cli_args = 'tritium_mobile_concentration_initial=1e25
                trap_per_free=1
                Outputs/file_base=ver-1jb_equivalent_concentrations_out
                Outputs/time_dependent_out/file_base=ver-1jb_equivalent_concentrations_time_dependent_out
                Outputs/profile_out/file_base=ver-1jb_equivalent_concentrations_profile_out'
  csvdiff = ver-1jb_equivalent_concentrations_profile_out_line_0048.csv
  should_execute = false # uses ver-1jb_csvdiff_equivalent_concentrations
  prereq = ver-1jb_csvdiff_equivalent_concentrations
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps with equivalent initial mobile and trapped tritium concentration and output the
                   profiles of concentrations.'
[]


[ver-1jb_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1jb.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution
                   when modeling decay of tritium and associated growth of He in a diffusion segment with distributed traps.'
  required_python_packages = 'csv matplotlib numpy pandas os'
[]


[ver-1jb_csvdiff]
  type = CSVDiff
  input = ver-1jb.i
  csvdiff = ver-1jb_time_dependent_out.csv
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps, with the fine mesh and timestep required to match the analytical solution to generate CSV
                   data for use in comparisons with the analytic solution.'
[]


[ver-1jb_csvdiff_profile]
  type = CSVDiff
  input = ver-1jb.i
  csvdiff = ver-1jb_profile_out_line_0048.csv
  should_execute = false # uses ver-1jb_csvdiff
  prereq = ver-1jb_csvdiff
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps and output the profiles of concentrations.'
[]


[ver-1jb_csvdiff_equivalent_concentrations]
  type = CSVDiff
  input = ver-1jb.i
  cli_args = 'tritium_mobile_concentration_initial=1e25
                trap_per_free=1
                Outputs/file_base=ver-1jb_equivalent_concentrations_out
                Outputs/time_dependent_out/file_base=ver-1jb_equivalent_concentrations_time_dependent_out
                Outputs/profile_out/file_base=ver-1jb_equivalent_concentrations_profile_out'
  csvdiff = ver-1jb_equivalent_concentrations_time_dependent_out.csv
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps with equivalent initial mobile and trapped tritium concentration,
                   with the fine mesh and timestep required to match the analytical solution to generate CSV data for use in
                   comparisons with the analytic solution.'
[]


[ver-1jb_csvdiff_profile_equivalent_concentrations]
  type = CSVDiff
  input = ver-1jb.i
  cli_args = 'tritium_mobile_concentration_initial=1e25
                trap_per_free=1
                Outputs/file_base=ver-1jb_equivalent_concentrations_out
                Outputs/time_dependent_out/file_base=ver-1jb_equivalent_concentrations_time_dependent_out
                Outputs/profile_out/file_base=ver-1jb_equivalent_concentrations_profile_out'
  csvdiff = ver-1jb_equivalent_concentrations_profile_out_line_0048.csv
  should_execute = false # uses ver-1jb_csvdiff_equivalent_concentrations
  prereq = ver-1jb_csvdiff_equivalent_concentrations
  requirement = 'The system shall be able to model decay of tritium and associated growth of He in a diffusion segment with
                   distributed traps with equivalent initial mobile and trapped tritium concentration and output the
                   profiles of concentrations.'
[]


[ver-1jb_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1jb.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution
                   when modeling decay of tritium and associated growth of He in a diffusion segment with distributed traps.'
  required_python_packages = 'csv matplotlib numpy pandas os'
[]


[ver-1kd_csv]
  type = CSVDiff
  input = ver-1kd.i
  cli_args = "simulation_time=0.05
                Executioner/nl_rel_tol=1e-6
                Outputs/exodus=false
                Outputs/file_base=ver-1kd_out_k10_light"
  csvdiff = ver-1kd_out_k10_light.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term.'
[]


[ver-1kd_csv_heavy]
  type = CSVDiff
  heavy = true
  input = ver-1kd.i
  csvdiff = ver-1kd_out_k10.csv
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term with tight tolerances for higher accuracy.'
[]


[ver-1kd_exodus_heavy]
  type = Exodiff
  heavy = true
  input = ver-1kd.i
  exodiff = ver-1kd_out_k10.e
  prereq = ver-1kd_csv_heavy
  should_execute = false # this test relies on the output files from ver-1kd_csv_heavy, so it shouldn't be run twice
  requirement = 'The system shall be able to model the diffusion of T2, H2 and HT across a membrane separating two enclosures in accordance with Sieverts’ law with a concentration jump at the interface and a T2 volumetric source term and generate an exodus file with tight tolerances for higher accuracy.'
[]


[ver-1kd_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1kd.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1kd, modeling a diffusion across a membrane separating two enclosures in accordance with Sieverts’ law  and a T2 volumetric source term.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[ver-1l_csvdiff]
  type = CSVDiff
  input = ver-1l.i
  should_execute = False # this test relies on the output files from ver-1l, so it shouldn't be run twice
  csvdiff = ver-1l_csv.csv
  requirement = 'The system shall be able to model species Fickian and Soret diffusion through a semi-infinity layer to generate CSV data for use in comparisons with the analytic solution.'
  prereq = ver-1l
[]


[ver-1l_comparison]
  type = RunCommand
  command = 'python3 comparison_ver-1l.py'
  requirement = 'The system shall be able to generate comparison plots between the analytical solution and simulated solution of verification case 1l, modeling species Fickian and Soret diffusion through a semi-infinity layer.'
  required_python_packages = 'matplotlib numpy pandas scipy os'
[]


[YHx_PCT_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'Executioner/nl_rel_tol=6e-6 Executioner/scheme="implicit-euler" InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_out.csv
  recover = false # see #196
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature.'
[]


[YHx_PCT_exodus]
  type = Exodiff
  input = YHx_PCT.i
  cli_args = 'Executioner/nl_rel_tol=6e-6 Executioner/scheme="implicit-euler" InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  exodiff = YHx_PCT_out.e
  prereq = YHx_PCT_csv
  should_execute = false # this test relies on the output files from YHx_PCT_csv, so it shouldn't be run twice
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature and generate an exodus file.'
[]


[YHx_PCT_T1173_P1e3_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'output_file_base=YHx_PCT_T1173_P1e3_out
                dt_init=1e1
                temperature=1173.15
                initial_pressure_H2_enclosure_1=1e3
                initial_atomic_fraction=1.55
                Executioner/num_steps=150
                Executioner/nl_rel_tol=8e-6
                Executioner/TimeStepper/growth_factor=1.1
                InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_T1173_P1e3_out.csv
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e3 Pa and T=1173.15 K.'
[]


[YHx_PCT_T1173_P1e4_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'output_file_base=YHx_PCT_T1173_P1e4_out
                temperature=1173.15
                initial_pressure_H2_enclosure_1=1e4
                initial_atomic_fraction=1.65
                Executioner/num_steps=200
                Executioner/nl_rel_tol=1e-6
                Executioner/TimeStepper/growth_factor=1.2
                InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_T1173_P1e4_out.csv
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=1e4 Pa and T=1173.15 K.'
[]


[YHx_PCT_T1173_P5e4_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'output_file_base=YHx_PCT_T1173_P5e4_out
                temperature=1173.15
                initial_pressure_H2_enclosure_1=5e4
                initial_atomic_fraction=1.85
                Executioner/num_steps=200
                Executioner/nl_rel_tol=5e-7
                Executioner/TimeStepper/growth_factor=1.2
                InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_T1173_P5e4_out.csv
  recover = false # see #196
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=5e4 Pa and T=1173.15 K.'
[]


[YHx_PCT_T1273_P3e3_csv]
  type = CSVDiff
  input = YHx_PCT.i
  cli_args = 'output_file_base=YHx_PCT_T1273_P3e3_out
                temperature=1273.15
                initial_pressure_H2_enclosure_1=3e3
                initial_atomic_fraction=1.41
                Executioner/num_steps=200
                Executioner/nl_rel_tol=9e-6
                InterfaceKernels/interface_reaction_YHx_PCT/silence_warnings=true' # should be removed once PCT curve implementation for low pressure is complete
  csvdiff = YHx_PCT_T1273_P3e3_out.csv
  recover = false
  requirement = 'The system shall be able to model the PCT curves of YHx to determine the surface atomic fraction as a function of pressure and temperature for P=3e3 Pa and T=1273.15 K.'
[]


[YHx_PCT_comparison]
  type = RunCommand
  command = 'python3 comparison_YHx_PCT.py'
  requirement = 'The system shall be able to generate comparison plots between experimental PCT curves, the model used in TMAP8, and TMAP8 predictions.'
  required_python_packages = 'matplotlib numpy pandas os git'
[]


[YHx_PCT_error_low_pressure]
  type = RunException
  input = YHx_PCT.i
  cli_args = 'initial_pressure_H2_enclosure_1=0.01'
  expect_err = 'In YHxPCT: pressure'
  requirement = 'The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the YHxPCT model (pressure too low).'
[]


[YHx_PCT_error_high_pressure]
  type = RunException
  input = YHx_PCT.i
  cli_args = 'initial_pressure_H2_enclosure_1=1e7'
  expect_err = 'In YHxPCT: pressure'
  requirement = 'The system shall be able to return a warning when the pressure and temperature are outside the range of validity of the YHxPCT model (pressure too high).'
[]

Introduction
Definitions and Acronyms
Design Stakeholders and Concerns
System Design
Requirements Cross - Reference
References
ActionComponents
Adaptivity
Application
AuxKernels
AuxScalarKernels
AuxVariables
BCs
Bounds
ChainControls
ChemicalComposition
Closures
Components
Constraints
ControlLogic
Controls
Convergence
Correctors
CoupledHeatTransfers
Covariance
DGKernels
Dampers
Debug
DeprecatedBlock
DiracKernels
Distributions
DomainIntegral
Executioner
Executors
FVBCs
FVICs
FVInterfaceKernels
FVInterpolationMethods
FVKernels
FluidProperties
FluidPropertiesInterrogator
Functions
FunctorMaterials
GlobalParams
GrayDiffuseRadiation
HDGKernels
ICs
InterfaceKernels
Kernels
Likelihood
LinearFVBCs
LinearFVKernels
Materials
Mesh
MeshDivisions
MeshModifiers
Modules
MortarGapHeatTransfer
MultiApps
NEML2
NodalKernels
NodalNormals
Outputs
ParallelAcquisition
ParameterStudy
Physics
Positions
Postprocessors
Preconditioning
Problem
ProjectedStatefulMaterialStorage
RayBCs
RayKernels
ReactionNetwork
Reporters
Samplers
ScalarKernels
SolidProperties
StochasticTools
Surrogates
ThermalContact
Times
Trainers
Transfers
UserObjects
VariableMappings
Variables
VectorPostprocessors